SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene13196

Length: 3386 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene13196
AAATAGGATATTAATATACTGCAGAAAACATAAAATTGACCCAGATTTAGCAACACCAAAAAGGAATCACATAGTATTCCCAGAGACATCTTCTACTGAAAAGAGTGTTAAAAGAAATCATGTAATTTCACCTGAGTCTAATGCGGCAAAAGCCATTGGAAAAAGGGTTAGAGAGTCCCCTGAACCTAAGAAGGAAAAAAGCCTTCAAAAACCATCTGTGAAGAAAGAAAAGAGCACGTTGAGTGCACGTGAAACTCCACCTGTAAAAGTTCGCGGACCTTCTGATTTGTCAAAGAAAGTAACAAAGGACAAAGAAATACCTTCTTCAGTGAAGAAGGAAGATAAATTTTCTACTTTGGAGCTAAGGAAAAGTTTAAGCCAGAAGGAGAGCAAAACCAAAGATTTGGATCTTGCGAGGAGTAAAACAGTGAAGCTTTTGTCTTCTTCTAAGCCAGAAGTTAAAAAAAGGCCCACAATGCCTCCATCGTTCACTGACATTGATGTCAAAAGTTCGGTTATGGCTGTAATTGAGAGAGCAACAGCTAGAATAAATTTGGATGATGTGTGTGCAAAGCACCAAGTGCCTTCAACACATAGGAGCTACAACATGAGGAATTTGGATAAAACTATTACTCAAGGAAAAGTCGAGGGTTCAGTCGAGGCTGTCAAGTCAGCTTTGAAAAAGCTTGAAGAAGGTGGCAGCATTGATGATGCTAAAGCTGTCTGTGAACCAGATGTACTCCTGCAAATGTCTAAATGGAAGAGTAAATTGAAGGTTTATCTTGCACCATTTATACATGGGATGCGTTACACGTCATTTGGTCGACATTTTACTAAAGTTGATAAACTGCAAGAGGTTGTTGAGAGGCTTCATTGGTATGTACAGAACGGTGATACGATTGTGGATTTCTGCTGTGGAGCAAATGATTTTTCAAGGCTGATGAAAGCAAAGCTTGAACAGTCTAAGAAGCAATGCTTTTTTAGGAATTTTGACATAATTCAACCAAAGAATGATTTTGAGTTTGAAAAACGGGATTGGCTGACTGTTGGTAAAGATGAATTACCAACCGGTACCAGATTGATTATGGGGTTGAATCCTCCATTTGGTGTTAAAGCTGCTCTTGCAAACAAATTTATTAACAAAGCCTTGGAGTTCAAGCCAAAGTTGGTCATCCTTATTGTACCAAAAGAAACACACAGACTTGATGAGAAAACGGGACCAAATAAATATGATCTTATTTGGGAGGATCCAGATCTTTTGAGAGGCCAGTCATTTTTTATCCCCGGTTCTGTTGATAGTGATGACAATCTACTGAGCCAGTGGAACTTGGTGGCACCACCACTTTATCTATGGAGTCGACCAGATTGGACTGAAACACACAAGACAATAGCAGCTAAACAGGGACATACTGGTAAGGGGACACAAGAGCAAAATATGGTAACAGCTCAGAACAATGTTGTAGATACAAGGCCTCCCAATGATGGAGAAGGAAATGCTTTTCAGACAGTTGAAGGAAAAGCCACCTCGGAAATACATTCTGAGAAAGATCAGCAAGATTCTGGTATTGGAATAAATCCTGTTAACCCGTATGGGGCTGATTACCAAGAAAATGAGAAAGAATCAAACCTTGACTCTCTATCTTTAGTACAAAGAGTAGACGAGTTACAACGGAAAGACGGTTCATCTTTCAAAATTAAAGAGGAACGCAAGGAATCCCCATACAACAGACATATTGCAGATAAGGAAAAGGACTCTGATGTTTATGACCACGCCAATGATCGCCCACCTAAACTTTTGGAGCAGAATCATGTAACGAGACAGGACAAAGGAGGCCGTGATGATGAAAGTGGGCGTAAGAAAAATCAGAAGGAGATATCACCATCCAGAGAAAGAATAGATAGACTAGACAAAGAAAAATATGAAAAGGGGAGATATGAGAAAGGTAGGCATGAAACAGACAAACGTGATAAAGACAGATCTAAAAATGAGAGGCCTGACAAGGGTTGGTTTGAAAAAGAACGAACTGCGACATCACCACCATCAATGAGAATGGAATTTGGGAAGGATCAAGATTCAGATCATTTTCAAGAGCAGGGATCTTTACCTATCAATGTCCCAGAGAGTTTTGGGAGGGTATATGAGCGAGGACCTGGTAATAGGGAAGACCTTGTTAGAGGACATCATATTGGTTCAACTGATTTGGGGCAAGAGTTTGTAAGAGGTTACCAGGGAATGCCACCTAATAATGTTGATGAAGGCTATAGTATGGGTTATCGTAGGATATCTGGTGGTGTGGATGATGCTCTTGGAAGAGGAATGCATAGAGGAGTTTCTGAGGATTATGGAAGAGGGTTGCAACTAGGTCGTCCTGGTAATGTTGAAGAGGAATATGCAGCTGGCGAAATAAGTAGAGGTATTCACAGGAATTTCCCTGGTAGTTTGGGATCAGAATATTCTGGGTCTCCTACAGACTTGCAAGTGCTGCAGAGTGGCGGCAGAGTATACAGCAGACAAGGTCAACATGACTTTGATTCTGAACGACCAAGGTTGTCACAAGATGACAGAGGTTCCGAGTGGTTGATGGGTGATACTGCTGAAAGGGGCAGATATTATATTGACCAGGGCTCCCATGTAAACAATATCTACTCCAGAAATTTGGATCTCGTGCCTGATATGCCTCGCTCATTACTGCTAGGGCAACAGCGTGAGGATTCCCCTCAACTCCATTCTAGGTTGCCATATCATTCTGATGCTTATGAACGCACAGGGCTGACCTCATCTGCAATGGACCGTTATGCTCCTCGACTGGATCAACAAATGAACTATACAAGATCAAGTTTGCACCAAAGTGATCAAGCACCTAGGAACATTTATGGGGCTGGATCCCAAAACTTTCCTTTCGATTCACGGGGAATTGCACCAGGACGGCAAAATCCTTATCCACATCAGAGTTCATCGGGTTGGATTGATGACTAAAATTGGCAGATCCTCAAGGACTTGCATATTTTAATATATTCTTTCTGTGGCTCTTTCGTCGCATGCCTATGTAAAATTGTTTACATTTTGAAGATGCCTAACATTTTCCAAGATCATATTTGTAGCCTTAATTTTGAATGATTGCAATCTTTTTTTTTCTAGTGTATTGGACACCCTAAATTGGCTTAATCATGGTAACAGGTTATTATGTTAACTATTCAAAATGCCAGGTCTAATCGTTGTCACCCATAAAATAGTGCATCCAAATGCCACGATGTTTGAAGCCTCAATTATTTGCTTGTGGGATTGTGCAGATTATGAGGAAAAATGATTACATTGTGGAAGCTGTATTATTTCACCGACCTGACTGTTGTTCATTACTGCTCTAATATATCTACCATCACTTCAT

Ace file of the UniGene sp_v1.1_unigene13196

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	CDC27 domain containing protein	-	-	4.0e-05	19%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	86%
Blast2go	protein binding	-	-	0.0	62%

Source	ECs	Term	Type	e value	Identity
Blast2go	Chitinase.	EC:3.2.1.14	-	0.0	62%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Amino sugar and nucleotide sugar metabolism	00520		0.0	62%

Source	GOs	Term	Type	Identity
Blast2go	multidimensional cell growth	GO:0009825	Biological Process	62%
Blast2go	root epidermal cell differentiation	GO:0010053	Biological Process	62%
Blast2go	response to water deprivation	GO:0009414	Biological Process	62%
Blast2go	response to salt stress	GO:0009651	Biological Process	62%
Blast2go	response to cytokinin stimulus	GO:0009735	Biological Process	62%
Blast2go	response to heat	GO:0009408	Biological Process	62%
Blast2go	lignin biosynthetic process	GO:0009809	Biological Process	62%
Blast2go	regulation of salicylic acid metabolic process	GO:0010337	Biological Process	62%
Blast2go	protein binding	GO:0005515	Molecular Function	62%
Blast2go	chitinase activity	GO:0004568	Molecular Function	62%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5AAI1

Fln msg: your sequence is longer than subject: 834 - 135

Fln protein: MPPSFTDIDVKSSVMAVIERATARINLDDVCAKHQVPSTHRSYNMRNLDKTITQGKVEGSVEAVKSALKKLEEGGSIDDAKAVCEPDVLLQMSKWKSKLKVYLAPFIHGMRYTSFGRHFTKVDKLQEVVERLHWYVQNGDTIVDFCCGANDFSRLMKAKLEQSKKQCFFRNFDIIQPKNDFEFEKRDWLTVGKDELPTGTRLIMGLNPPFGVKAALANKFINKALEFKPKLVILIVPKETHRLDEKTGPNKYDLIWEDPDLLRGQSFFIPGSVDSDDNLLSQWNLVAPPLYLWSRPDWTETHKTIAAKQGHTGKGTQEQNMVTAQNNVVDTRPPNDGEGNAFQTVEGKATSEIHSEKDQQDSGIGINPVNPYGADYQENEKESNLDSLSLVQRVDELQRKDGSSFKIKEERKESPYNRHIADKEKDSDVYDHANDRPPKLLEQNHVTRQDKGGRDDESGRKKNQKEISPSRERIDRLDKEKYEKGRYEKGRHETDKRDKDRSKNERPDKGWFEKERTATSPPSMRMEFGKDQDSDHFQEQGSLPINVPESFGRVYERGPGNREDLVRGHHIGSTDLGQEFVRGYQGMPPNNVDEGYSMGYRRISGGVDDALGRGMHRGVSEDYGRGLQLGRPGNVEEEYAAGEISRGIHRNFPGSLGSEYSGSPTDLQVLQSGGRVYSRQGQHDFDSERPRLSQDDRGSEWLMGDTAERGRYYIDQGSHVNNIYSRNLDLVPDMPRSLLLGQQREDSPQLHSRLPYHSDAYERTGLTSSAMDRYAPRLDQQMNYTRSSLHQSDQAPRNIYGAGSQNFPFDSRGIAPGRQNPYPHQSSSGWIDD*

Protein Length: 835

Fln nts: AAATAGGATATTAATATACTGCAGAAAACATAAAATTGACCCAGATTTAGCAACACCAAAAAGGAATCACATAGTATTCCCAGAGACATCTTCTACTGAAAAGAGTGTTAAAAGAAATCATGTAATTTCACCTGAGTCTAATGCGGCAAAAGCCATTGGAAAAAGGGTTAGAGAGTCCCCTGAACCTAAGAAGGAAAAAAGCCTTCAAAAACCATCTGTGAAGAAAGAAAAGAGCACGTTGAGTGCACGTGAAACTCCACCTGTAAAAGTTCGCGGACCTTCTGATTTGTCAAAGAAAGTAACAAAGGACAAAGAAATACCTTCTTCAGTGAAGAAGGAAGATAAATTTTCTACTTTGGAGCTAAGGAAAAGTTTAAGCCAGAAGGAGAGCAAAACCAAAGATTTGGATCTTGCGAGGAGTAAAACAGTGAAGCTTTTGTCTTCTTCTAAGCCAGAAGTTAAAAAAAGGCCCACA_-_ATGCCTCCATCGTTCACTGACATTGATGTCAAAAGTTCGGTTATGGCTGTAATTGAGAGAGCAACAGCTAGAATAAATTTGGATGATGTGTGTGCAAAGCACCAAGTGCCTTCAACACATAGGAGCTACAACATGAGGAATTTGGATAAAACTATTACTCAAGGAAAAGTCGAGGGTTCAGTCGAGGCTGTCAAGTCAGCTTTGAAAAAGCTTGAAGAAGGTGGCAGCATTGATGATGCTAAAGCTGTCTGTGAACCAGATGTACTCCTGCAAATGTCTAAATGGAAGAGTAAATTGAAGGTTTATCTTGCACCATTTATACATGGGATGCGTTACACGTCATTTGGTCGACATTTTACTAAAGTTGATAAACTGCAAGAGGTTGTTGAGAGGCTTCATTGGTATGTACAGAACGGTGATACGATTGTGGATTTCTGCTGTGGAGCAAATGATTTTTCAAGGCTGATGAAAGCAAAGCTTGAACAGTCTAAGAAGCAATGCTTTTTTAGGAATTTTGACATAATTCAACCAAAGAATGATTTTGAGTTTGAAAAACGGGATTGGCTGACTGTTGGTAAAGATGAATTACCAACCGGTACCAGATTGATTATGGGGTTGAATCCTCCATTTGGTGTTAAAGCTGCTCTTGCAAACAAATTTATTAACAAAGCCTTGGAGTTCAAGCCAAAGTTGGTCATCCTTATTGTACCAAAAGAAACACACAGACTTGATGAGAAAACGGGACCAAATAAATATGATCTTATTTGGGAGGATCCAGATCTTTTGAGAGGCCAGTCATTTTTTATCCCCGGTTCTGTTGATAGTGATGACAATCTACTGAGCCAGTGGAACTTGGTGGCACCACCACTTTATCTATGGAGTCGACCAGATTGGACTGAAACACACAAGACAATAGCAGCTAAACAGGGACATACTGGTAAGGGGACACAAGAGCAAAATATGGTAACAGCTCAGAACAATGTTGTAGATACAAGGCCTCCCAATGATGGAGAAGGAAATGCTTTTCAGACAGTTGAAGGAAAAGCCACCTCGGAAATACATTCTGAGAAAGATCAGCAAGATTCTGGTATTGGAATAAATCCTGTTAACCCGTATGGGGCTGATTACCAAGAAAATGAGAAAGAATCAAACCTTGACTCTCTATCTTTAGTACAAAGAGTAGACGAGTTACAACGGAAAGACGGTTCATCTTTCAAAATTAAAGAGGAACGCAAGGAATCCCCATACAACAGACATATTGCAGATAAGGAAAAGGACTCTGATGTTTATGACCACGCCAATGATCGCCCACCTAAACTTTTGGAGCAGAATCATGTAACGAGACAGGACAAAGGAGGCCGTGATGATGAAAGTGGGCGTAAGAAAAATCAGAAGGAGATATCACCATCCAGAGAAAGAATAGATAGACTAGACAAAGAAAAATATGAAAAGGGGAGATATGAGAAAGGTAGGCATGAAACAGACAAACGTGATAAAGACAGATCTAAAAATGAGAGGCCTGACAAGGGTTGGTTTGAAAAAGAACGAACTGCGACATCACCACCATCAATGAGAATGGAATTTGGGAAGGATCAAGATTCAGATCATTTTCAAGAGCAGGGATCTTTACCTATCAATGTCCCAGAGAGTTTTGGGAGGGTATATGAGCGAGGACCTGGTAATAGGGAAGACCTTGTTAGAGGACATCATATTGGTTCAACTGATTTGGGGCAAGAGTTTGTAAGAGGTTACCAGGGAATGCCACCTAATAATGTTGATGAAGGCTATAGTATGGGTTATCGTAGGATATCTGGTGGTGTGGATGATGCTCTTGGAAGAGGAATGCATAGAGGAGTTTCTGAGGATTATGGAAGAGGGTTGCAACTAGGTCGTCCTGGTAATGTTGAAGAGGAATATGCAGCTGGCGAAATAAGTAGAGGTATTCACAGGAATTTCCCTGGTAGTTTGGGATCAGAATATTCTGGGTCTCCTACAGACTTGCAAGTGCTGCAGAGTGGCGGCAGAGTATACAGCAGACAAGGTCAACATGACTTTGATTCTGAACGACCAAGGTTGTCACAAGATGACAGAGGTTCCGAGTGGTTGATGGGTGATACTGCTGAAAGGGGCAGATATTATATTGACCAGGGCTCCCATGTAAACAATATCTACTCCAGAAATTTGGATCTCGTGCCTGATATGCCTCGCTCATTACTGCTAGGGCAACAGCGTGAGGATTCCCCTCAACTCCATTCTAGGTTGCCATATCATTCTGATGCTTATGAACGCACAGGGCTGACCTCATCTGCAATGGACCGTTATGCTCCTCGACTGGATCAACAAATGAACTATACAAGATCAAGTTTGCACCAAAGTGATCAAGCACCTAGGAACATTTATGGGGCTGGATCCCAAAACTTTCCTTTCGATTCACGGGGAATTGCACCAGGACGGCAAAATCCTTATCCACATCAGAGTTCATCGGGTTGGATTGATGACTAA___AATTGGCAGATCCTCAAGGACTTGCATATTTTAATATATTCTTTCTGTGGCTCTTTCGTCGCATGCCTATGTAAAATTGTTTACATTTTGAAGATGCCTAACATTTTCCAAGATCATATTTGTAGCCTTAATTTTGAATGATTGCAATCTTTTTTTTTCTAGTGTATTGGACACCCTAAATTGGCTTAATCATGGTAACAGGTTATTATGTTAACTATTCAAAATGCCAGGTCTAATCGTTGTCACCCATAAAATAGTGCATCCAAATGCCACGATGTTTGAAGCCTCAATTATTTGCTTGTGGGATTGTGCAGATTATGAGGAAAAATGATTACATTGTGGAAGCTGTATTATTTCACCGACCTGACTGTTGTTCATTACTGCTCTAATATATCTACCATCACTTCAT

Fln Alignment:

sp_v1.1_unigene13196___MGDTAERGRYYIDQGSHVNNIYSRNLDLVPDMPRSLLLGQQREDSPQLHSRLPYHSDAYERTGLTSSAMDRYAPRLDQQMNYTRSSLHQSDQAPRN-IYGA----GSQNFPFDSRGIAPGRQNPYPHQSSSGWIDD
D5AAI1_______________MGDTPQRGRYYIDQGSHVNNIYSRNSDLVPDMPRSLLLGQQHED-PQVHPRLPYHSDAYERTGLTSSAMQRYAPRLDQQMNYTRSNLHQIEQAPRNSIYGAGQVLGSQNFPFDSRDFAPGPQNPYPHQSSSGWIDD

SNPs (tot: 23)

Position	A %	C %	G %	T %	Probability
213	25	75			0.996473
238		80		20	0.995493
963		14	85		0.993533
964			14	85	0.993533
966			14	85	0.993533
968	85			14	0.993533
971	85		14		0.993533
972			85	14	0.993533
974	85		14		0.993533
976			14	85	0.993533
977	14		85		0.993533
979	14			71	0.984337
1069	75		25		0.996473
1071		25		75	0.996473
1242	33			66	0.997452
1358	11		88		0.923564
1360		88	11		0.923564
1362	88		11		0.923564
1597			90	10	0.90298
1696	60			40	1.0
2272	13		86		0.999973
2669	25		75		1.0
2709	10		90		0.999898

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain