SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene13160

Length: 995 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene13160

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Calmodulin binding protein, putative n=1 Tax=Ricinus communis RepID=B9SRE3_RICCO	-	-	66%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	45%
Blast2go	calmodulin binding	-	-	76%

Source	GOs	Term	Type	Identity
Blast2go	defense response	GO:0006952	Biological Process	76%
Blast2go	cell death	GO:0008219	Biological Process	76%
Blast2go	calmodulin binding	GO:0005516	Molecular Function	76%
Blast2go	integral to membrane	GO:0016021	Cellular Component	76%
Blast2go	plasma membrane	GO:0005886	Cellular Component	76%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Mlo-related protein	IPR004326	-	0.0	76%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LMC0

Fln msg: STOP codon was not found. Distance to subject end: 62 aas, your sequence is shorter than subject: 331 - 483

Fln protein: KYHTATTWSRNRFFAWVVCFLRQFGQTVTKADYITLRMGFVTNHNLPFKYDFHSYMIRSMEDEFKQIVGLSAPLWGFVIAFMLFNVHDANLYFWISFVPIVLILILGAKLQHIIATLALENVGANASPAVKVTPRDELFWFNKPELLLSLIHFIIFENAFELASFFWVWWQFGFHSCFISRHQFVYIRLFLGFVVQFLCSYSTLPLYALVTQMGTNFKAALISPKIRESIHGWGKEAKKRRKRGVAADGTTTDDSTVRSSERGIIDSSKGNLNSNGHQTDRPNIDEDYSQSYHHNIDGPGEIELQNEALTTMVSNEDPLLGTAFTISQCII

Protein Length: 332

Fln nts: AAATACCACACAGCAACAACTTGGAGCAGAAACAGATTCTTTGCTTGGGTGGTGTGTTTTCTTCGGCAGTTTGGTCAAACTGTTACAAAAGCTGATTACATAACTTTGAGAATGGGATTTGTGACAAATCACAATTTGCCATTTAAATATGACTTCCATAGCTATATGATACGTTCTATGGAGGATGAATTCAAGCAGATTGTTGGTCTCAGTGCACCTTTGTGGGGTTTTGTCATTGCTTTTATGCTATTCAATGTGCATGATGCTAATTTATACTTCTGGATCTCTTTTGTCCCTATTGTTCTCATCCTCATTTTGGGAGCGAAGCTGCAGCATATTATTGCAACACTTGCATTAGAGAATGTTGGAGCAAATGCATCTCCTGCGGTAAAAGTGACTCCTCGGGATGAGCTTTTCTGGTTTAATAAACCAGAGTTGCTCCTCTCTCTGATCCATTTCATTATTTTTGAGAATGCATTTGAGCTGGCCTCATTCTTTTGGGTTTGGTGGCAATTTGGATTCCATTCATGTTTTATTTCTCGCCATCAGTTTGTTTATATACGTCTGTTTTTGGGGTTTGTTGTCCAGTTCTTGTGCAGCTATAGCACCTTGCCACTTTATGCACTTGTTACTCAGATGGGAACAAATTTCAAGGCAGCATTGATTTCCCCGAAAATCAGAGAAAGTATTCACGGTTGGGGAAAAGAAGCAAAGAAAAGGCGAAAGCGCGGGGTTGCAGCAGATGGAACTACGACAGATGACTCAACTGTAAGAAGTTCAGAGAGAGGCATCATAGACTCAAGCAAAGGTAATTTAAATTCTAATGGACACCAGACGGATAGGCCCAATATCGATGAAGATTACAGTCAGAGCTATCATCACAATATAGATGGTCCAGGTGAGATTGAGCTGCAGAATGAGGCTTTGACAACCATGGTTTCCAATGAGGATCCTCTTCTTGGCACTGCTTTCaCAATATCGCAGTGTATCATTTA

Fln Alignment:

sp_v1.1_unigene13160___KYHTATTWSRNRFFAWVVCFLRQFGQTVTKADYITLRMGFVTNH-NLPFKYDFHSYMIRSMEDEFKQIVGLSAPLWGFVIAFMLFNVHDANLYFWISFVPIVLILILGAKLQHIIATLALENVGANASPAVKVTPR--DELFWFNKPELLLSLIHFIIFENAFELASFFWVWWQFGFHSCFISRHQFVYIRLFLGFVVQFLCSYSTLPLYALVTQMGTNFKAALISPKIRESIHGWGKEAKKRRKRGVAADGTTTDDS
B8LMC0_______________KTHAMGTWGKSDLLSWMVSFLRQFYGSVKKSDYSTLRLGFIEKHCKTNPTFNFHNYMMRTLEADFKKVVGISSYLWGFVVIFLLLNIEGWHTYFWIAFIPLILLLAVGAKLEHIITQLAQEVVEKHTAVEGDLVVRLSDEHFWFGKPKLVLYLIHFILFQNAFEIGFFFWILTTYGFDSCIMGKIAYIIPRLAVGVIIQVLCSYSTLPLYVLVTQMGTSFKREILNEHIHEGLSVWHQKAKAKAK-GRSTSKPNDDDN

SNPs (tot: 12)

Position	A %	C %	G %	T %	Probability
383		66	33		0.997452
390	66		33		0.997452
392	66	33			0.997452
393	66	33			0.997452
394			66	33	0.997452
397	66		33		0.997452
400		66	33		0.997452
403	33			66	0.997452
405			66	33	0.997452
406		33	66		0.997452
407	33		66		0.997452
442		66		33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain