SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene13155

Length: 975 nt

Origin of reads: Biogeco_1 Biogeco_2 Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene13155 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Protein kinase APK1B, chloroplast, putative n=1 Tax=Ricinus communis RepID=B9S1V9_RICCO	-	-	1.0e-17	49%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	82%
Blast2go	protein kinase chloroplast	-	-	0.0	63%

Source	GOs	Term	Type	e value	Identity
Blast2go	kinase activity	GO:0016301	Molecular Function	0.0	63%

Full-Lengther Next Prediction

SNPs (tot: 30)

Position	A %	C %	G %	T %	Probability
229		75		25	0.996473
589		10	90		0.90298
591	10		90		0.90298
644	88		11		0.923564
817	6			93	0.999453
824		91		8	0.999766
825	8	91			0.999766
827	83	16			1.0
828	83	16			1.0
829		16	83		1.0
830	16	8		75	1.0
833	90	10			0.90298
834	90	10			0.90298
836		10	90		0.90298
837		10	90		0.90298
843		12	87		0.992554
844		25	75		1.0
845	87	12			0.992554
846	87	12			0.992554
848		87		12	0.992554
860	71	28			1.0
861	71	28			1.0
862	85	14			0.993533
863		14	71	14	0.984337
865			83	16	0.994512
881		20		80	0.995493
927		66	33		0.997452
928		66		33	0.997452
929		66	33		0.997452
932			33	66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain