SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene13133

Length: 2746 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene13133
ATTTTGGACATAAGGGATTTTTTCAATAGAAATCCCGTGAAGACGGCCCTTAAACTCCTTGCTGGTTATTTTTAGCAAATTCTCCGAGATCTCGGATCTCGACTTTACAATTATGAAGCGACAACACTTTCGATTGCAGCAGCAGCAGCAGCCGCAGCCGAACGGTCATGGCCGCTGCTGCAGCACTGTTCCGGTCCATCCCAACCCGGTGTCCATGCCAGGGTCCGGGCCACCACCACCATCACCAAGAACAACAGCAACAGCGCCTGCAGCGGGAGCAGCAGCAGCAGGGGGAGGTGGAGGTTCAGGGTCTTGCAAGGGCAAGGAAGTGGTATTGAAGGATACTTCTAAGCAGGGTGTAGGTGTTGATATGGAACTGGCTTCCATGGGTTACAGTGTGAAATCCTCTGAACTGGAACAAGTGGCACACAGGCTTGAGCAGCTGGAGATGATGATGTGCAACGGGCAAGAGGATGGCATCATTTCCCACTTGTCGTCAGAGGCTGTGCACTATAATCCCTCGGACCTCGGTGGATGGATTGAAAGTATGCTCAGCGAGCTTCATGTCCCTATTCTTCCTCCAACAGATCAGCCGTTTCAGTTCCCTCAGGCAGCAGCGGATCAATCGTCTACGGTTCGGGAAGCGAGCAATTCGGTGCCGGAATCATCCACTTCGACCTCGAAGGGCACCAGATCTGTGCAGAATGTTGAACAGGACCAACAGTACAGGTTAAATGGGTCCGGGCCAAGGGGGAGTACGAGATAATGGGATTGATCGCATGTTCAGTAACTATGGTGGCCTATTTTCTCAAGTATTAGACGTCTCGGACCTGCTAGTCGATGACCCTGATGTCCTACAGGAACCACCACCACAGGAGGCTTCGCCCTCAACTCTGCTGCTGCAGAGCTCCAGCAACTCTTCGCTTGAAGTCCAATCCGGGCTAGACCATCTGGAAGAGGATGTTACAGGAAGAGAGCAAAAGCGTTACCGTGTCTGCGACCCGCAGCTTTCGGAGCGAACCGTGGTAGTAATGGGGGCAGACCCGCACGAATCCGGAGTCCGTCTCGTGCACACGCTGATGGCCTGCGCAGAAGCGGTGCAGCGCGGTAATTTGGCCATCGCGCGGGAAATGGTGAAAGAAGTGAGAATTCTGGCTTCAGCACAGGGCGGGGCAATGAGCAAGGTCGCCACATATTTTGCCGAGGCTCTTGCCCGGCGAATCTATGGGTTTCTCCCTCAGGACACCTTGCGGTTCAACCAGAACGATCCCTTGTCCGATTTTCTGCAATTTCATTTCTACCAAACCTGCCCTTATCTCAAATTCGCGCACTTCATAGCCAACCAGGCCATTCTGGATGCCTTCTCCGGGCACCAACAGGTTCATGTCATAGACTTCAATCTGAAACAGGGGATCCAATGGCCGGCCTTGATACAGGCACTGGCTCTTCGCCCCGGCGGGCCACCGGCTTTCAGGCTAACCGGAATCGGCCCACCCCAACCCGACGGAACCGATGCCTTGCAGGAGGTCGGCACGAGGCTCCACCAATTTGCAGAGTCCGTCAATGTAAAATTCTCCTTCCGTGGCTATGTTGCCACAAGCCTCGCCGACATCAAACCATGGATGCTCGACGCCCGGCCCGAGCTCGAGGCTGTTGCAGTGAATTCTATCCTTGAGCTCCATCGTCTCCTGGAGGACCCCATCCCCGGACGACCCAGTGCCATCGATAGAGTACTCGCTTCCATCTGGAGCCTGAAGCCCAAGATCTTGACAGTGGTTGAACAGGAGGCCGACCACAACCGCCCTGTTTTCTTGGATCGATTCACAGAGGCACTGCACTATTATTCGACAGTTTTTGATTCCCTGGAGGCGCGCGGGTTGCAGGCCCAGAGCGAAGAGCAGGTGATGTCGGAAGTCTATCTGGGTCGAGAAATTTGCAACATTGTAGCCTGTGAGCGATCGGAACGGGTGGAAAGGCACGAACCTCTCTTGAATTGGAGCATTCGCTTGAGAAACGCTGGCTTCTGGCCTATTCCTTTGGGATCCAATGCTTTCAAGCAGGCCAGCATGTTGCTCAGTCTCTTCTCAGGTGGAGAAGGATATAGGGTTGAGGAGAATAATGGGTGTCTAACACTTGGTTGGCACAGCAGACCTCTAATTGCTGCTTCTGCCTGGCAACGCTGTTAATCATCTATCTCACAGCATCAAGAAGGTGATAGGTGGATCAAGTACCCAGCAATTATTATTGCAGCAGCAGCATCTTTTCAAGGAACCCACAACAGCCCAATTCAATTCCGGATCAGGTCAGCTAAAGCAAAATTAACGAGTCCGTAGATTACCTACCAGCGCCGAGAATCTATTCATGTATCATACTGAAGTTCTTGAGTTATTATAAGCAAAATTAGATTACACTTATTATTAGCTCGACTCAGTGCCCTCTACGACTGCATAAATCACTGAGCGATATAATTTGTAATCTCTCAAACACTTTGAACTTCAAATGTCAGAAGCATTGAATCTCACCCGGCCTATGTCATAAGTAAGTTATTATTGTTCACAGAGATCTCTGCCAATGTTGCATCGTCCTGATGTAATCAAGAGAATTGAATGCAAAGCAACTTCCCATCATCAATTCTTTTAATTCTCAGTGATTCAGTGCATGATATTAGATTTTTCATTTACTTCGCTTGTACTTGAATATGAAATTCCTAATTAATGTGGGAATTACCTTTACTGATTCTGTGATA

Ace file of the UniGene sp_v1.1_unigene13133

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	DELLA domain GRAS family transcription factor rga-like protein n=2 Tax=Populus trichocarpa RepID=B9GV61_POPTR	-	-	67%
FL-Next	sp=DELLA protein GAI; Solanum lycopersicum (Tomato) (Lycopersicon esculentum).	-	-	52%
Blast2go	della protein	-	-	79%

Source	GOs	Term	Type	Identity
Blast2go	regulation of cellular transcription, DNA-dependent	GO:0045449	Biological Process	79%
Blast2go	gibberellic acid mediated signaling pathway	GO:0009740	Biological Process	79%
Blast2go	nucleus	GO:0005634	Cellular Component	79%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Transcription factor GRAS	IPR005202	-	0.0	79%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: Q7Y1B6

Fln msg: Separated hits, possible frame ERROR between 562 and 1011, your sequence is longer than subject: 692 - 588

Fln protein: MKRQHFRLQQQQQPQPNGHGRCCSTVPVHPNPVSMPGSGPPPPSPRTTATAPAAGAAAAGGGGGSGSCKGKEVVLKDTSKQGVGVDMELASMGYSVKSSELEQVAHRLEQLEMMMCNGQEDGIISHLSSEAVHYNPSDLGGWIESMLSExxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxSERTVVVMGADPHESGVRLVHTLMACAEAVQRGNLAIAREMVKEVRILASAQGGAMSKVATYFAEALARRIYGFLPQDTLRFNQNDPLSDFLQFHFYQTCPYLKFAHFIANQAILDAFSGHQQVHVIDFNLKQGIQWPALIQALALRPGGPPAFRLTGIGPPQPDGTDALQEVGTRLHQFAESVNVKFSFRGYVATSLADIKPWMLDARPELEAVAVNSILELHRLLEDPIPGRPSAIDRVLASIWSLKPKILTVVEQEADHNRPVFLDRFTEALHYYSTVFDSLEARGLQAQSEEQVMSEVYLGREICNIVACERSERVERHEPLLNWSIRLRNAGFWPIPLGSNAFKQASMLLSLFSGGEGYRVEENNGCLTLGWHSRPLIAASAWQRC*

Protein Length: 693

Fln nts: ATTTTGGACATAAGGGATTTTTTCAATAGAAATCCCGTGAAGACGGCCCTTAAACTCCTTGCTGGTTATTTTTAGCAAATTCTCCGAGATCTCGGATCTCGACTTTACAATT_-_ATGAAGCGACAACACTTTCGATTGCAGCAGCAGCAGCAGCCGCAGCCGAACGGTCATGGCCGCTGCTGCAGCACTGTTCCGGTCCATCCCAACCCGGTGTCCATGCCAGGGTCCGGGCCACCACCACCATCACCAAGAACAACAGCAACAGCGCCTGCAGCGGGAGCAGCAGCAGCAGGGGGAGGTGGAGGTTCAGGGTCTTGCAAGGGCAAGGAAGTGGTATTGAAGGATACTTCTAAGCAGGGTGTAGGTGTTGATATGGAACTGGCTTCCATGGGTTACAGTGTGAAATCCTCTGAACTGGAACAAGTGGCACACAGGCTTGAGCAGCTGGAGATGATGATGTGCAACGGGCAAGAGGATGGCATCATTTCCCACTTGTCGTCAGAGGCTGTGCACTATAATCCCTCGGACCTCGGTGGATGGATTGAAAGTATGCTCAGCGAGCTxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxTTCGGAGCGAACCGTGGTAGTAATGGGGGCAGACCCGCACGAATCCGGAGTCCGTCTCGTGCACACGCTGATGGCCTGCGCAGAAGCGGTGCAGCGCGGTAATTTGGCCATCGCGCGGGAAATGGTGAAAGAAGTGAGAATTCTGGCTTCAGCACAGGGCGGGGCAATGAGCAAGGTCGCCACATATTTTGCCGAGGCTCTTGCCCGGCGAATCTATGGGTTTCTCCCTCAGGACACCTTGCGGTTCAACCAGAACGATCCCTTGTCCGATTTTCTGCAATTTCATTTCTACCAAACCTGCCCTTATCTCAAATTCGCGCACTTCATAGCCAACCAGGCCATTCTGGATGCCTTCTCCGGGCACCAACAGGTTCATGTCATAGACTTCAATCTGAAACAGGGGATCCAATGGCCGGCCTTGATACAGGCACTGGCTCTTCGCCCCGGCGGGCCACCGGCTTTCAGGCTAACCGGAATCGGCCCACCCCAACCCGACGGAACCGATGCCTTGCAGGAGGTCGGCACGAGGCTCCACCAATTTGCAGAGTCCGTCAATGTAAAATTCTCCTTCCGTGGCTATGTTGCCACAAGCCTCGCCGACATCAAACCATGGATGCTCGACGCCCGGCCCGAGCTCGAGGCTGTTGCAGTGAATTCTATCCTTGAGCTCCATCGTCTCCTGGAGGACCCCATCCCCGGACGACCCAGTGCCATCGATAGAGTACTCGCTTCCATCTGGAGCCTGAAGCCCAAGATCTTGACAGTGGTTGAACAGGAGGCCGACCACAACCGCCCTGTTTTCTTGGATCGATTCACAGAGGCACTGCACTATTATTCGACAGTTTTTGATTCCCTGGAGGCGCGCGGGTTGCAGGCCCAGAGCGAAGAGCAGGTGATGTCGGAAGTCTATCTGGGTCGAGAAATTTGCAACATTGTAGCCTGTGAGCGATCGGAACGGGTGGAAAGGCACGAACCTCTCTTGAATTGGAGCATTCGCTTGAGAAACGCTGGCTTCTGGCCTATTCCTTTGGGATCCAATGCTTTCAAGCAGGCCAGCATGTTGCTCAGTCTCTTCTCAGGTGGAGAAGGATATAGGGTTGAGGAGAATAATGGGTGTCTAACACTTGGTTGGCACAGCAGACCTCTAATTGCTGCTTCTGCCTGGCAACGCTGTTAA___TCATCTATCTCACAGCATCAAGAAGGTGATAGGTGGATCAAGTACCCAGCAATTATTATTGCAGCAGCAGCATCTTTTCAAGGAACCCACAACAGCCCAATTCAATTCCGGATCAGGTCAGCTAAAGCAAAATTAACGAGTCCGTAGATTACCTACCAGCGCCGAGAATCTATTCATGTATCATACTGAAGTTCTTGAGTTATTATAAGCAAAATTAGATTACACTTATTATTAGCTCGACTCAGTGCCCTCTACGACTGCATAAATCACTGAGCGATATAATTTGTAATCTCTCAAACACTTTGAACTTCAAATGTCAGAAGCATTGAATCTCACCCGGCCTATGTCATAAGTAAGTTATTATTGTTCACAGAGATCTCTGCCAATGTTGCATCGTCCTGATGTAATCAAGAGAATTGAATGCAAAGCAACTTCCCATCATCAATTCTTTTAATTCTCAGTGATTCAGTGCATGATATTAGATTTTTCATTTACTTCGCTTGTACTTGAATATGAAATTCCTAATTAATGTGGGAATTACCTTTACTGATTCTGTGATA

Fln Alignment:

sp_v1.1_unigene13133___DTSKQGVGVDMELASMGYSVKSSELEQVAHRLEQLEMMMCNGQEDGIISHLSSEAVHYNPSDLGGWIESMLSELxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxSERTVVVMGADPHESGVRLVHTLMACAEAVQRGNLAIAREMVKEVRILASAQGGAMSKVATYFAEALARRIYGFLPQDTLRFNQNDPLSDFLQFHFYQTCPYLKFAHFIANQAILDAFSGHQQVHVIDFNLKQGIQWPALIQALALRPGGPPAFRLTGIGPPQPDGTDALQEVGTRLHQFAESVNVKFSFRGYVATSLADIKPWMLDARP-ELEAVAVNSILELHRLLEDPIPGRPSAIDRVLASIWSLKPKILTVVEQEADHNRPVFLDRFTEALHYYSTVFDSLEARGLQA-------------QSEEQVMSEVYLGREICNIVACERSERVERHEPLLNWSIRLRNAGFWPIPLGSNAFKQASMLLSLFSGGEGYRVEENNGCLTLGWHSRPLIAASAWQ
Q7Y1B6_______________EEEKPDAGMDELLAVLGYKVKSSDMADVAQKLEQLEMAMGTTMEDG-ITHLSTDTVHKNPSDMAGWVQSMLSSIxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxSSATRPVVLVDSQETGVRLVHTLMACAEAVQQENLTLADQLVRHIGILAVSQSGAMRKVATYFAEALARRIYKIYPQDSMESSY----TDVLQMHFYETCPYLKFAHFTANQAILEAFTGCNKVHVIDFSLKQGMQWPALMQALALRPGGPPAFRLTGIGPPQPDNTDALQQVGWKLAQLAETIGVEFEFRGFVANSLADLDATILDIRPSETEAVAINSVFELHRLL-----SRPGAIEKVLNSIKQINPKIVTLVEQEANHNAGVFIDRFNEALHYYSTMFDSLESSGSSSSASPTGILPQPPVNNQDLVMSEVYLGRQICNVVACEGSDRVERHETLNQWRVRMNSSGFDPVHLGSNAFKQASMLLALFAGGDGYRVEENDGCLMLGWHTRPLIATSAWK

SNPs (tot: 48)

Position	A %	C %	G %	T %	Probability
762	87			12	0.992554
765		12		87	0.992554
766	87	12			0.992554
767	87			12	0.992554
771		12	87		0.992554
772	87			12	0.992554
773			12	87	0.992554
775		12	87		0.992554
779			87	12	0.992554
1899	87			12	0.992554
1900	87	12			0.992554
1902	87			12	0.992554
1905	87	12			0.992554
1906			87	12	0.992554
1907			87	12	0.992554
1908			12	87	0.992554
1910	87	12			0.992554
1915	12		87		0.992554
1916		12	87		0.992554
1917	87			12	0.992554
1918	87	12			0.992554
1919	12		87		0.992554
2006	85		14		0.993533
2223		16	83		0.994512
2228	83		16		0.994512
2229		20		80	0.995493
2231	80			20	0.995493
2232	80		20		0.995493
2234		20		80	0.995493
2235	80			20	0.995493
2236		80	20		0.995493
2237		80		20	0.995493
2240		20	80		0.995493
2241		80		20	0.995493
2242	80	20			0.995493
2287		66		33	0.997452
2506	43			56	1.0
2547	73			26	1.0
2633	11		11	77	0.968132
2637	33		16	50	1.0
2639		50	16		1.0
2640	16			83	0.994512
2641			16	33	1.0
2642	16	16		66	0.988813
2643	20		20	60	0.99255
2647		20	20	60	0.99255
2648			20	80	0.995493
2649		80		20	0.995493

SSRs (tot: 4)

Start position	End position	Sequence	Length
136	152	GCA GCA GCA GCA GCA GC	17
230	241	CCA CCA CCA CCA	12
277	290	AGC AGC AGC AGC AG	14
2247	2258	GCA GCA GCA GCA	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain