SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene13126

Length: 444 nt

Origin of reads: Uma

UniGene Fasta

>sp_v1.1_unigene13126
GTGCGATCATCCTCGCAAAACTCTCTGTGATTCCCGTTCGGAGAGGTTACTGGGGTGCTCAGCTCGGTGAACCTCACACCGTCCCATCGAAAGTCAGTGGGAAGGTCGGATCGGTAATGTGCCGTCTTATCCCTGCTCCGCGAGGAACTGGTATCGTCGCTGCCCCCGCCTCAAAGAGACTTTTGCAACTCGCTGGTGTCCAAGATTGTTATACGCAATCTAAGGGATCCACTGCGACGATGGGCAATTTCTTGAAAGCTACTTTCGCTGCCCTTACCTTGACCTACGGCTTCCTCACCCCCGACTTATGGCGGGAAATTCCGTTATCAAAAGTCCCCTACGACGAGTACAGTGGGCACTTGCAGCTCGCTGGCAAGAAGTATTAGTTTTTTTACAGTTGTGTATCCGCCACCTTGTTGTGTCTGCCTGCATATTCATCGATTC

Ace file of the UniGene sp_v1.1_unigene13126

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	40S ribosomal protein S2; K02981 small subunit ribosomal protein S2e	-	-	81%
FL-Next	tr=40S ribosomal protein S2; Picea abies (Norway spruce) (Picea excelsa).	-	-	64%
Blast2go	40s ribosomal protein s2	-	-	85%

Source	ECs	Term	Type	e value	Identity
Blast2go	Protein-synthesizing GTPase.	EC:3.6.5.3	-	0.0	85%

Source	GOs	Term	Type	Identity
Blast2go	translation	GO:0006412	Biological Process	85%
Blast2go	structural constituent of ribosome	GO:0003735	Molecular Function	85%
Blast2go	RNA binding	GO:0003723	Molecular Function	85%
Blast2go	lipid particle	GO:0005811	Cellular Component	85%
Blast2go	small ribosomal subunit	GO:0015935	Cellular Component	85%

Source	InterPros	Term	Type	Identity
Blast2go	Ribosomal protein S5	IPR000851	-	85%
Blast2go	Ribosomal protein S5, C-terminal	IPR005324	-	85%
Blast2go	Ribosomal protein S5 domain 2-type fold, subgroup	IPR014721	-	85%
Blast2go	Ribosomal protein S5 domain 2-type fold	IPR020568	-	85%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: Q9AVU0

Fln msg: your sequence is shorter than subject: 128 - 232

Fln protein: AIILAKLSVIPVRRGYWGAQLGEPHTVPSKVSGKVGSVMCRLIPAPRGTGIVAAPASKRLLQLAGVQDCYTQSKGSTATMGNFLKATFAALTLTYGFLTPDLWREIPLSKVPYDEYSGHLQLAGKKY*

Protein Length: 129

Fln nts: GTGCGATCATCCTCGCAAAACTCTCTGTGATTCCCGTTCGGAGAGGTTACTGGGGTGCTCAGCTCGGTGAACCTCACACCGTCCCATCGAAAGTCAGTGGGAAGGTCGGATCGGTAATGTGCCGTCTTATCCCTGCTCCGCGAGGAACTGGTATCGTCGCTGCCCCCGCCTCAAAGAGACTTTTGCAACTCGCTGGTGTCCAAGATTGTTATACGCAATCTAAGGGATCCACTGCGACGATGGGCAATTTCTTGAAAGCTACTTTCGCTGCCCTTACCTTGACCTACGGCTTCCTCACCCCCGACTTATGGCGGGAAATTCCGTTATCAAAAGTCCCCTACGACGAGTACAGTGGGCACTTGCAGCTCGCTGGCAAGAAGTATTAG___TTTTTTTACAGTTGTGTATCCGCCACCTTGTTGTGTCTGCCTGCATATTCATCGATTC

Fln Alignment:

sp_v1.1_unigene13126___AIILAKLSVIPVRRGYWGAQLGEPHTVPXXXXXXXXXXMCRLIPAPRGTGIVAAPASKRLLQLAGVQDCYTQSKGSTATMGNFLKATFAALTLTYGFLTPDLWREIPLSKVPYDEYSGHLQLAGK
Q9AVU0_______________AIILAKLSVIPVRRGYWGNKIGKPHTVPVKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIEDVFTSSRGSTKTLGNFVKATFECLLKTYGFLTPDLWRETRFSKSPFQEYTDLLAKPAK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain