SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene13109

Length: 442 nt

Origin of reads: Biogeco_1 Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene13109
ACATTTCGTTTGTCCAAATATAACAGCAAGATATCCAGCATTCTGTGGGTGGGATATCCAGGAGAAGCTGGAGGAGATGCATTGGCTGACATAATCTTTGGCCATCACAATCCAGGTGGGAGATTGCCTGTAACATGGTATCCACAAGATTTTGTTGCAAAAGCACCCATGACAAACATGAACATGCGCCCTGATCCCGCAACTGGTTACCCAGGACGAACTTACAGATTTTACAGAGGGAGAACAGTTTACCCATTTGGCTATGGATTGAGCTACACAACATTCTCCCATACTCTGGTCAATGCACCAGAGCTGGTTTCATTGTCTCTCCATGAAAGCCCACTTATGCCATACTATGGAACAAACAATTCCTGCACTTCTGTCCATGTGGAGAACACCAAGTGCCACGGATTGCTCTTTGATATTCATATGGATGTGCATA

Ace file of the UniGene sp_v1.1_unigene13109 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Alpha-N-arabinofuranosidase n=1 Tax=Medicago sativa subsp. x varia RepID=XYL2_MEDVA	-	-	62%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	55%
Blast2go	beta-xylosidase alpha-l-arabinosidase	-	-	72%

Source	ECs	Term	Type	e value	Identity
Blast2go	Xylan 1,4-beta-xylosidase.	EC:3.2.1.37	-	0.0	72%

Source	KEGGs	Term	Identity
Blast2go	Starch and sucrose metabolism	00500	72%
Blast2go	Amino sugar and nucleotide sugar metabolism	00520	72%
Blast2go	Metabolic pathways	01100	72%

Source	GOs	Term	Type	Identity
Blast2go	xylan catabolic process	GO:0045493	Biological Process	72%
Blast2go	xylan 1,4-beta-xylosidase activity	GO:0009044	Molecular Function	72%
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	72%
Blast2go	apoplast	GO:0048046	Cellular Component	72%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Glycoside hydrolase family 3 C-terminal domain	IPR002772	-	0.0	72%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5ABI5

Fln msg: Distance to subject end: 93 aas, your sequence is shorter than subject: 147 - 304

Fln protein: TFRLSKYNSKISSILWVGYPGEAGGDALADIIFGHHNPGGRLPVTWYPQDFVAKAPMTNMNMRPDPATGYPGRTYRFYRGRTVYPFGYGLSYTTFSHTLVNAPELVSLSLHESPLMPYYGTNNSCTSVHVENTKCHGLLFDIHMDVH

Protein Length: 148

Fln nts: ACATTTCGTTTGTCCAAATATAACAGCAAGATATCCAGCATTCTGTGGGTGGGATATCCAGGAGAAGCTGGAGGAGATGCATTGGCTGACATAATCTTTGGCCATCACAATCCAGGTGGGAGATTGCCTGTAACATGGTATCCACAAGATTTTGTTGCAAAAGCACCCATGACAAACATGAACATGCGCCCTGATCCCGCAACTGGTTACCCAGGACGAACTTACAGATTTTACAGAGGGAGAACAGTTTACCCATTTGGCTATGGATTGAGCTACACAACATTCTCCCATACTCTGGTCAATGCACCAGAGCTGGTTTCATTGTCTCTCCATGAAAGCCCACTTATGCCATACTATGGAACAAACAATTCCTGCACTTCTGTCCATGTGGAGAACACCAAGTGCCACGGATTGCTCTTTGATATTCATATGGATGTGCATA

Fln Alignment:

sp_v1.1_unigene13109___KISSILWVGYPGEAGGDALADIIFGHHNPGGRLPVTWYPQDFVAKAPMTNMNMRPDPATGYPGRTYRFYRGRTVYPFGYGLSYTTFSHTLVNAPELVSLSLHESPLMPYYGT--NNSCTSVHVENTKCHGLLF
D5ABI5_______________QISSIIWAGYPGQAGGQALAEIIFGDYNPGGRLPMTWYPQDFV-KIPMTDMNMRPNHDTGYPGRTYRFYTGKKVFEFGQGLSYSAYSYNF-SSTTIQKIDLNVT--MEHFEALGNRGKGHVRVENTPCRKLKF

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
206		33		66	0.997452
208		33		66	0.997452
209	33		66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain