SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene13097

Length: 2615 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene13097
AATGCAGATGGTTCTCCACCAATTCCCCATGGATCTCGTGTTAAGATACATATGGATACAATTTCTGGACCAAAGGACGCAATCCCTGCTTGGATTAAGTTTGCTGTTCAAGCTCCGGGTGAGATTCCATACAATGGAATATATTATGATCCCCCTCCTGAGGATAGATATGAATTTAAGTATCCTCGACCAAAGCAGCCCAAATCATTGCGAATATATGAAGCGCATGTTGGCATGAGCAGCACGGAACCCAAAATTAATACATATGTTGAGTTCAGGGATGATGTGCTACCACGTGTGAAAGACCTTGGCTACAATGCTGTCCAACTCATGGCAATTCAAGAACATGCTTACTATGCTAGCTTCGGGTACCATGTCACAAATTTTTTTGCCGCAAGTAGTCGCTGCGGGACTCCAGATGATCTAAAATCTCTCATTGACAGAGCCCATGAATTAGATCTTATTGTCCTCATGGATATTGTGCACAGTCATGCTTCAAATAATGTCTTGGATGGACTGAATATGTTTGATGGAACTGATTCTCATTATTTTCACTCTGGATCTCGAGGATATCACTGGATGTGGGATTCACGCCTCTTCAACTATGGTCACTGGGAGGTGCTCCGGTTTTTAATGTCAAATGCCCGCTGGTGGTTGGAGGAGTATAAATTTGATGGGTTTAGGTTTGATGGTGTAACATCTATGATGTACACCCATCACGGATTACAGGTAGCATTCACTGGGAATTATGCTGAGTACTTTGGATTTGCTACTGATGTAGATGCTGTGGTTTATTTGATGCTGGTTAATGACATGATTCATGGTCTATTTCCCCAGGCCATAACAATTGGAGAAGATGTGAGTGGTATGCCAACCTTTTCTCGTTCTGTACAAGATGGCGGAGTGGGATTTGATTATCGACTCCATATGGCAGTAGCTGACAAATGGATTGAATTGCTTTCAAAGAAGAAGGACGAGGATTGGCAAATGGGTGATATTGTATTTACACTATCAAATAGAAGGTGGTCTGAGAAATGTGTAGTATATGCAGAGAGTCATGATCAGGCTCTTGTCGGTGATAAGACAATAGCCTTTTGGCTCATGGACAAGGATATGTATGATTTTATGGCACTTGATCAGCCTGCAACTCCGGCCATAGATCGTGGAATAGCTCTTCACAAGATGATCCGACTTGTCACAATGGGTTTAGGTGGTGAAGGGTATCTAAATTTCATGGGAAATGAATTTGGACACCCAGAATGGATTGATTTTCCTAGAGGTGATCAGCATCTTCCAAATGGGAAATTTGTTCCAGGAAACAACAACAGTTTTGATAAATGCCGGCGCAGATTTGATCTAGGAAATGCAGAGTTTCTTAGGTACCATGGTATGCAGGAGTTTGACAAAGCTATGCAACATTTGGAGGAAAAATATGGTTTTATGACTTCGGGACACCAATATGTTTCACGGAAAGATGAGGGTGATAAGGTAATTGTGTTTGAGAGGGCAAACCTGGTGTTCGTTTTCAACTTCCACTGGCATAAAAGTTTTACAGATTACAGAGTTGGCTGTCTGAAGCCTGGAAAGTACAAGGTGGTACTGGATTCTGATGAAAGAAAATTTGGCGGGTTTGCCAGAATAGATCACAATGCAAGGTTTCACACTACTGAGGGATGGTATGATGATCGGCCCCACTCCTTTCTTGTGTATGCACCTTGCAGAACTTCAGTTGTCTATAGTCTTACAGATGATTAAATGAGAATAAAAATAAGATGTTTGCCTTGTATCCAAATTTTACCGGAAGGGAATACATGATTGCAACATGTTTGTATGACTGAAGAAAGCAGTATTTCTAAAACAGATATCGGAGGACATGGCTTCTCCCATTATCTTGTTTTTCCATATAAATCTCACTTGGGCATACCATCTTTAGTTCTGTAGTCAGCCCCAGGTATTGCCCGATTATCTGTTATCATGCATAAGTTGTACATTCCCGAATGTAACAGATATTAACTGAGTCTATTGGGTGATTCAAAGTCACATCTAGTTTTGAAGCTATGGGGAATGTAAAATCAGTACCAGATCATGTATTCATTGTTAAACTTTCAAAACGTTTTTAGATGGATAGTGGGAACAGCTCAGGCCTCAGGAGGCCATAACCTTTCTTCTGTGAATATCAATAAGAATGTAATGCATTTAAATTTACTCTTAGAGGGACAAGGCAAAACCTCTAGTACAATTGTTTCATCTCCCTGATTGTCTTTACCAAAATCCTATTTTCTTAGAAGGTCGCTCTTTTCTTCAATAAAAATCAATCTCTCCACGAATGGATATCTATGAAGTGTGATTAAGCTTGAATATCATTCTCTCGTTACAAATATTACAGGCCCTTTGAATTCCCACCAGGTTCTTCTACAGATTAAGTGTCTCTTTGCCTATGATTCCTTCGGTAGGTTGAACTTAATTGCTGGAATACTCAGTTGTATTTTGTTCCGTATTTTCTGAACTTATTGAATTAATGGCCAATTTGGTATCACCATAAACTCGTGCATTAATTTGGAAAGGAGGATACAATAGACGCAATTTGTGATTAATTAATTGGACACGTTATTAGC

Ace file of the UniGene sp_v1.1_unigene13097

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Starch branching enzyme II-2 n=2 Tax=Malus x domestica RepID=A4GW34_MALDO	-	-	83%
FL-Next	sp=1,4-alpha-glucan-branching enzyme 2, chloroplastic/amyloplastic; Zea mays (Maize).	-	-	80%
Blast2go	starch branching enzyme ii	-	-	91%

Source	ECs	Term	Type	e value	Identity
Blast2go	Hydrolases, Glycosylases, Glycosidases, i.e. enzymes hydrolyzing O- and S-glycosyl compounds.	EC:3.2.1.-	-	0.0	91%

Source	KEGGs	Term	Type	Identity
Blast2go	Ascorbate and aldarate metabolism	00053		91%
Blast2go	Ubiquinone and other terpenoid-quinone biosynthesis	00130		91%
Blast2go	Amino sugar and nucleotide sugar metabolism	00520		91%
Blast2go	Glycosaminoglycan degradation	00531		91%
Blast2go	Metabolic pathways	01100		91%
Blast2go	1,4-alpha-glucan branching enzyme.	EC:2.4.1.18	-	91%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Starch and sucrose metabolism	00500		0.0	91%
Blast2go	Metabolic pathways	01100		0.0	91%

Source	GOs	Term	Type	Identity
Blast2go	amylopectin biosynthetic process	GO:0010021	Biological Process	91%
Blast2go	hydrolase activity, hydrolyzing O-glycosyl compounds	GO:0004553	Molecular Function	91%
Blast2go	cation binding	GO:0043169	Molecular Function	91%
Blast2go	1,4-alpha-glucan branching enzyme activity	GO:0003844	Molecular Function	91%
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	91%

Source	InterPros	Term	Type	Identity
Blast2go	Glycosyl hydrolase, family 13, catalytic domain	IPR006047	-	91%
Blast2go	Alpha-amylase, C-terminal all beta	IPR006048	-	91%
Blast2go	Glycosyl hydrolase, family 13, subfamily, catalytic domain	IPR006589	-	91%
Blast2go	Glycosyl hydrolase, family 13, all-beta	IPR013780	-	91%
Blast2go	Glycoside hydrolase, subgroup, catalytic domain	IPR013781	-	91%
Blast2go	Alpha amylase	IPR015902	-	91%
Blast2go	Glycoside hydrolase, superfamily	IPR017853	-	91%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: sp_plants

Fln subject: Q08047

Fln msg: your sequence is shorter than subject: 585 - 799

Fln protein: NADGSPPIPHGSRVKIHMDTISGPKDAIPAWIKFAVQAPGEIPYNGIYYDPPPEDRYEFKYPRPKQPKSLRIYEAHVGMSSTEPKINTYVEFRDDVLPRVKDLGYNAVQLMAIQEHAYYASFGYHVTNFFAASSRCGTPDDLKSLIDRAHELDLIVLMDIVHSHASNNVLDGLNMFDGTDSHYFHSGSRGYHWMWDSRLFNYGHWEVLRFLMSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYAEYFGFATDVDAVVYLMLVNDMIHGLFPQAITIGEDVSGMPTFSRSVQDGGVGFDYRLHMAVADKWIELLSKKKDEDWQMGDIVFTLSNRRWSEKCVVYAESHDQALVGDKTIAFWLMDKDMYDFMALDQPATPAIDRGIALHKMIRLVTMGLGGEGYLNFMGNEFGHPEWIDFPRGDQHLPNGKFVPGNNNSFDKCRRRFDLGNAEFLRYHGMQEFDKAMQHLEEKYGFMTSGHQYVSRKDEGDKVIVFERANLVFVFNFHWHKSFTDYRVGCLKPGKYKVVLDSDERKFGGFARIDHNARFHTTEGWYDDRPHSFLVYAPCRTSVVYSLTDD*

Protein Length: 586

Fln nts: AATGCAGATGGTTCTCCACCAATTCCCCATGGATCTCGTGTTAAGATACATATGGATACAATTTCTGGACCAAAGGACGCAATCCCTGCTTGGATTAAGTTTGCTGTTCAAGCTCCGGGTGAGATTCCATACAATGGAATATATTATGATCCCCCTCCTGAGGATAGATATGAATTTAAGTATCCTCGACCAAAGCAGCCCAAATCATTGCGAATATATGAAGCGCATGTTGGCATGAGCAGCACGGAACCCAAAATTAATACATATGTTGAGTTCAGGGATGATGTGCTACCACGTGTGAAAGACCTTGGCTACAATGCTGTCCAACTCATGGCAATTCAAGAACATGCTTACTATGCTAGCTTCGGGTACCATGTCACAAATTTTTTTGCCGCAAGTAGTCGCTGCGGGACTCCAGATGATCTAAAATCTCTCATTGACAGAGCCCATGAATTAGATCTTATTGTCCTCATGGATATTGTGCACAGTCATGCTTCAAATAATGTCTTGGATGGACTGAATATGTTTGATGGAACTGATTCTCATTATTTTCACTCTGGATCTCGAGGATATCACTGGATGTGGGATTCACGCCTCTTCAACTATGGTCACTGGGAGGTGCTCCGGTTTTTAATGTCAAATGCCCGCTGGTGGTTGGAGGAGTATAAATTTGATGGGTTTAGGTTTGATGGTGTAACATCTATGATGTACACCCATCACGGATTACAGGTAGCATTCACTGGGAATTATGCTGAGTACTTTGGATTTGCTACTGATGTAGATGCTGTGGTTTATTTGATGCTGGTTAATGACATGATTCATGGTCTATTTCCCCAGGCCATAACAATTGGAGAAGATGTGAGTGGTATGCCAACCTTTTCTCGTTCTGTACAAGATGGCGGAGTGGGATTTGATTATCGACTCCATATGGCAGTAGCTGACAAATGGATTGAATTGCTTTCAAAGAAGAAGGACGAGGATTGGCAAATGGGTGATATTGTATTTACACTATCAAATAGAAGGTGGTCTGAGAAATGTGTAGTATATGCAGAGAGTCATGATCAGGCTCTTGTCGGTGATAAGACAATAGCCTTTTGGCTCATGGACAAGGATATGTATGATTTTATGGCACTTGATCAGCCTGCAACTCCGGCCATAGATCGTGGAATAGCTCTTCACAAGATGATCCGACTTGTCACAATGGGTTTAGGTGGTGAAGGGTATCTAAATTTCATGGGAAATGAATTTGGACACCCAGAATGGATTGATTTTCCTAGAGGTGATCAGCATCTTCCAAATGGGAAATTTGTTCCAGGAAACAACAACAGTTTTGATAAATGCCGGCGCAGATTTGATCTAGGAAATGCAGAGTTTCTTAGGTACCATGGTATGCAGGAGTTTGACAAAGCTATGCAACATTTGGAGGAAAAATATGGTTTTATGACTTCGGGACACCAATATGTTTCACGGAAAGATGAGGGTGATAAGGTAATTGTGTTTGAGAGGGCAAACCTGGTGTTCGTTTTCAACTTCCACTGGCATAAAAGTTTTACAGATTACAGAGTTGGCTGTCTGAAGCCTGGAAAGTACAAGGTGGTACTGGATTCTGATGAAAGAAAATTTGGCGGGTTTGCCAGAATAGATCACAATGCAAGGTTTCACACTACTGAGGGATGGTATGATGATCGGCCCCACTCCTTTCTTGTGTATGCACCTTGCAGAACTTCAGTTGTCTATAGTCTTACAGATGATTAA___ATGAGAATAAAAATAAGATGTTTGCCTTGTATCCAAATTTTACCGGAAGGGAATACATGATTGCAACATGTTTGTATGACTGAAGAAAGCAGTATTTCTAAAACAGATATCGGAGGACATGGCTTCTCCCATTATCTTGTTTTTCCATATAAATCTCACTTGGGCATACCATCTTTAGTTCTGTAGTCAGCCCCAGGTATTGCCCGATTATCTGTTATCATGCATAAGTTGTACATTCCCGAATGTAACAGATATTAACTGAGTCTATTGGGTGATTCAAAGTCACATCTAGTTTTGAAGCTATGGGGAATGTAAAATCAGTACCAGATCATGTATTCATTGTTAAACTTTCAAAACGTTTTTAGATGGATAGTGGGAACAGCTCAGGCCTCAGGAGGCCATAACCTTTCTTCTGTGAATATCAATAAGAATGTAATGCATTTAAATTTACTCTTAGAGGGACAAGGCAAAACCTCTAGTACAATTGTTTCATCTCCCTGATTGTCTTTACCAAAATCCTATTTTCTTAGAAGGTCGCTCTTTTCTTCAATAAAAATCAATCTCTCCACGAATGGATATCTATGAAGTGTGATTAAGCTTGAATATCATTCTCTCGTTACAAATATTACAGGCCCTTTGAATTCCCACCAGGTTCTTCTACAGATTAAGTGTCTCTTTGCCTATGATTCCTTCGGTAGGTTGAACTTAATTGCTGGAATACTCAGTTGTATTTTGTTCCGTATTTTCTGAACTTATTGAATTAATGGCCAATTTGGTATCACCATAAACTCGTGCATTAATTTGGAAAGGAGGATACAATAGACGCAATTTGTGATTAATTAATTGGACACGTTATTAGC

Fln Alignment:

sp_v1.1_unigene13097___NADGSPPIPHGSRVKIHMDTISGPKDAIPAWIKFAVQAPGEIPYNGIYYDPPPEDRYEFKYPRPKQPKSLRIYEAHVGMSSTEPKINTYVEFRDDVLPRVKDLGYNAVQLMAIQEHAYYASFGYHVTNFFAASSRCGTPDDLKSLIDRAHELDLIVLMDIVHSHASNNVLDGLNMFDGTDSHYFHSGSRGYHWMWDSRLFNYGHWEVLRFLMSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYAEYFGFATDVDAVVYLMLVNDMIHGLFPQAITIGEDVSGMPTFSRSVQDGGVGFDYRLHMAVADKWIELLSKKKDEDWQMGDIVFTLSNRRWSEKCVVYAESHDQALVGDKTIAFWLMDKDMYDFMALDQPATPAIDRGIALHKMIRLVTMGLGGEGYLNFMGNEFGHPEWIDFPRGDQHLPNGKFVPGNNNSFDKCRRRFDLGNAEFLRYHGMQEFDKAMQHLEEKYGFMTSGHQYVSRKDEGDKVIVFERANLVFVFNFHWHKSFTDYRVGCLKPGKYKVVLDSDERKFGGFARIDHNARFHTTEGWYDDRPHSFLVYAPCRTSVVYS
Q08047_______________NADGTSPIPHGSRVKVRMDTPSGIKDSIPAWIKYSVQAPGEIPYDGIYYDPPEEVKYVFRHAQPKRPKSLRIYETHVGMSSPEPKINTYVNFRDEVLPRIKKLGYNAVQIMAIQEHSYYGSFGYHVTNFFAPSSRFGTPEDLKSLIDRAHELGLLVLMDVVHSHASSNTLDGLNGFDGTDTHYFHSGPRGHHWMWDSRLFNYGNWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVTFTGNFNEYFGFATDVDAVVYLMLVNDLIHGLYPEAVTIGEDVSGMPTFALPVHDGGVGFDYRMHMAVADKWIDLL-KQSDETWKMGDIVHTLTNRRWLEKCVTYAESHDQALVGDKTIAFWLMDKDMYDFMALDRPSTPTIDRGIALHKMIRLITMGLGGEGYLNFMGNEFGHPEWIDFPRGPQRLPSGKFIPGNNNSYDKCRRRFDLGDADYLRYHGMQEFDQAMQHLEQKYEFMTSDHQYISRKHEEDKVIVFEKGDLVFVFNFHCNNSYFDYRIGCRKPGVYKVVLDSDAGLFGGFSRIHHAAEHFTADCSHDNRPYSFSVYTPSRTCVVYA

SNPs (tot: 21)

Position	A %	C %	G %	T %	Probability
174			33	66	0.997452
672	83		16		0.994512
721	75		25		1.0
724	75		25		1.0
725		75		25	1.0
727	25		75		1.0
728	75	25			1.0
731	75		25		1.0
732		75	25		1.0
733	75	25			1.0
734			75	25	1.0
738		25	75		1.0
973	88		11		0.923564
1526		50		50	1.0
1640		88		11	0.923564
1708	11			88	0.999952
1711		10		89	0.999919
1714	89	10			0.999919
1725	89			10	0.999919
1727	89			10	0.999919
2214		10		90	0.90298

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain