SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene13089

Length: 1282 nt

Origin of reads: Biogeco_1 Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene13089

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	AtRABA5d (Arabidopsis Rab GTPase homolog A5d); GTP binding; K07976 Rab family, other	-	-	62%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	67%
Blast2go	rab gtp-binding protein rab11a	-	-	80%

Source	GOs	Term	Type	Identity
Blast2go	protein transport	GO:0015031	Biological Process	80%
Blast2go	small GTPase mediated signal transduction	GO:0007264	Biological Process	80%
Blast2go	hydrolase activity	GO:0016787	Molecular Function	80%
Blast2go	GTP binding	GO:0005525	Molecular Function	80%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5ACS6

Fln msg:

Fln protein: MAYADNEQSEDYLFKIVLLGDSAVGKSNLLSRYTKNEFSRNSKATIGVEFQAKTLEIDKREIKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFQNICRWLEELRMHSDAGIVTMLVGNKCDLKEAREVSVDDGAALAQSEDLFFMETSALDSTNVSIAFQTIVKEIYNVTSRKVLSFDNQKLETTLTNRKTLKLDDSENQKDLWIGVPCCRG*

Protein Length: 222

Fln nts: ACTGGACCCTGGTAGCATAGGTTTCGACTCTTGTCCTGAGATTGGTGAGTTTTTCACATTTATATCTTTAAACAGAAAATTCCTTTCTGGTTGAATCTTCGGTTTTTTCCCCATCCTTCGACAAATCTCCAGCAAACGTTTGGAATTCCGGCTCGGTTATCTTCCATTCCGAGTTTTATTTGTGCAATTCTTCGCAATCTTCGCCATATGCCGTTGAAGAAAGCTTAAAGATTATGTAATTCCGGATTATATTGGATATTTTGTTTGTACTCCTGCGTCTTCCACATTTCTTTTTTTGGATTGGACATTTGTATTTTCTTCTCTGTTCTAAAATATTCACGACTCTATCTTGTTTCATATATTTGCAATATGTCTTGTGAATGAATTTGCAATTTAATTTTGCCATGGCAAGGTCATCGAGCAGAACTGTATAATTCCTGTCCGCCTGCCCCTAATTCGAGCCCAAA_-_ATGGCCTATGCGGACAATGAGCAAAGTGAAGATTATCTTTTCAAAATTGTATTGTTAGGCGATTCCGCCGTTGGAAAATCGAATTTACTGTCGCGATACACCAAAAATGAGTTCTCTCGAAATTCAAAAGCAACGATCGGTGTGGAATTTCAGGCAAAGACATTGGAAATCGACAAGAGGGAGATTAAAGCGCAGATTTGGGACACTGCTGGTCAGGAACGGTTCAGAGCCGTAACGTCTGCATACTACAGGGGCGCTGTAGGAGCTCTGTTGGTCTACGATATAAGCAGGCGCCAGACTTTCCAAAACATCTGTCGCTGGCTAGAAGAACTCCGCATGCACTCCGACGCGGGCATTGTGACAATGCTCGTGGGCAACAAGTGCGATCTAAAGGAGGCAAGAGAGGTTTCCGTAGATGACGGAGCGGCACTTGCCCAGTCTGAAGATCTGTTCTTCATGGAAACATCTGCCCTGGACTCTACAAATGTGTCCATTGCTTTTCAAACAATAGTaAAAGAGATCTACAACGTCACGAGCAGAAAAGTTCTGTCATTTGACAACCAAAAGCTAGAGACAACGTTAACTAACAGAAAAACATTGAAATTGGACGACAGCGAAAACCAAAAAGATTTATGGATTGGGGTCCcGTGCTGCCGCGGCTGA___GTAAATCCAGAGGCAATTTTGCGCGCTCTCTCTTTTCTTTTTTCCTTTAAACTGTTTTTCGAATACAGAACTCTCTCCTTTGAATCGGAGTTCTGATCAGGTCTAGGGTTTAGCTGCTCTGGGGAAATGCTTCTCTGGCGAAAAGCAAGTTC

Fln Alignment:

sp_v1.1_unigene13089___MAYADNEQSEDYLFKIVLLGDSAVGKSNLLSRYTKNEFSRNSKATIGVEFQAKTLEIDKREIKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFQNICRWLEELRMHSDAGIVTMLVGNKCDLKEAREVSVDDGAALAQSEDLFFMETSALDSTNVSIAFQTIVKEIYNVTSRKVLSFDNQKLETTLTNRKTLKLDDSENQK------DLWIGVPCCRG
D5ACS6_______________MSYAGEEQTEDYLFKIVLIGDSAVGKSNLLARYARNEFYPNSKSTIGVEFQTQTMQIDGKEIKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDISRRQTFDNISRWLDELHTHSDMNVVTVIVGNKTDLLDAREVSTEEGAALAEAQNIYFVETSALDSTNVQLAFQTVVKEIYNILSRKVLSCQEQKLESKISNGKTVVLQEAESESTAKQTGKLW----CCSG

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
982		66	33		0.997452
1116	66		33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain