SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene13070

Length: 1973 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene13070
CGTCGTGACCTTGGCTGTCACGTCGTGACCTTGGCTGTCACTCAATTGTCCCGCGTGACTGACACCTCTTTTCTCTCTCTTTCTTTCTTTGTGTATTCTTATAAGTGGTTTTGTCGAGTCCGTTTCTGACGCTCAAGGCGGTTTTGCTTCGGCCTCTGGAAAACCTGCCGTCAAGGCGCTTGGATTTCTTTTCCGGCCTCTAAAGCGTTTACGAGGCAAACGAGCCCCTGGCCTCGCCATACGTCTGGTTAAGACCACAATCTTTCTTCTGTAAGAAGTGGCCTCCCCCTGGATCTCGGCGATTTTCTGGTTTTCAAGATTCCGGCCTGTTCGCAACTTAGGGTTTGAGTGGCTGTGCAGTTTGAAAACTGCTTTTGTTTCTGCTAGGGGTTTTGCGTTTATCGGAAGCCCGAGCATTGTAGAATGCCTTTGTCGGCCAGGTTTGGAACGGTGGTTTGAAGGGCTGTTTGGAAGGAAGCGGTATTCCGGGGTTTCTGGTTTCTTCGGAGCTGGAGGACGGTAGTCAGGGTTTTTACTGCGGTGATTTCTGGTGCAAATCAATGGCGTCTGAGCCCGTGGTCTCAGAGATGCAGGCTGAGAAACAGGTAGGCGAAATGATGCAGAGCATGAAAATTCAAGACTCTGCACAAGCTCCGGCAGTGGAAACGAACGCCAACATTGCGAAAGAGGCACCTGGGCCAGAGGGGAGCCCTTCTGATGCCACTTCTTCTGTAACATCACTGGGAGATTCTACCAGTACAAAGGACAGTGAGTTGGAGCAAGAAAATGTGGTGGAAAATGGGTTATATTATCCACCAAATAACTACTATGGCTTCTATTACCCAGGTTATGAAGTCGTAGGTAATGAATGGGATGAGCATGGTGCTTATCTTGGAATGGATGGCTTGGAGATTCCTTATACAGGAATCCAAGCTGAAAATGGACCCTTGTTATACTATATGCCAGGTTATGGTTACCCTCAGCCTGCTTATAATCCTTATAATGCATACTTTCCTGGTGCTATGCTTGGGGCTGATGGTCTTCTTGCTCATCAGCCATATTATCCCAGTCCTATGTATCAACAACCCCTCACTTCTCCAGCCTATTTTCAGCCACCTGTAGCATATGGATCGGAAGTTACACCAGCTTTTTCATGGGAGTCGGGACTTGCAGTTGCAGATCGGGCAAATGGAAATACTTACAATGGAAGTGCAGCAGGTGGGCCAAGAACAAGCCATTCCACAGCGGTTGTTTCCTCCCAGGTGCCATATTCGAAGGCTATACCACCAGCAAGGAAACAGAATGTTGCTTTGGATTCAAAAGGGGCAGCTCAGCCATCTGAGGGACTGCAATCATCACATTCAGTTCCTGCAGGTCAACCTAATATTCACTCTATAGGCCCTCAAAGCCAGAGTGGGAGGCCTGTGAATAAGATCCCATCACATGGTTCTACTGGTCAAACTGCAGCTTTACCAAAAGGCTACGTACCGTTAGGAAAAGTTGCAGGTTGTTCAAACCAAGGCAAGGCCAATGTTCTGTATCCTAATAATGCTGCAGATTTCAAACCCAATGGGCATGAATATCTTGCTGGTGACAGATTGAAGACACGAGCAAAGGTCAATGGAAATGGGAATTTGGATGTCCTTAATGAACAGAATAGAGGTCCTCGAATCAACAAGATGAGGAGCCCCTGGTTATTACCTGATGCGAATACTGGGGCTCATGGTCTGGTGGAAAATACTGAAAATTGTGTTCCTGAGGTAAATAGAGACCAATTTAACCTGGCAGATTTTCCCACAAAATATGATAATGCGTTGTTTTTTGTGATAAAATCTTATAGTGAGGATGATGTGCATAAGAGTATTAAATACAATGTTTGGGCAAGCACTCCAAATGGAAATAAAAGATTAGATGCGGCATATCAAGTTGCGCGGGAGAGGTCTGGTGGAAATCCTGGAAGCTGTCCGGTTTTT

Ace file of the UniGene sp_v1.1_unigene13070

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Unassigned protein	-	-	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	86%
Blast2go	rubisco subunit binding-protein beta subunit-like	-	-	52%

Source	InterPros	Term	Type	e value	Identity
Blast2go	YTH domain	IPR007275	-	0.0	52%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5A886

Fln msg: Distance to subject end: 210 aas, your sequence is shorter than subject: 471 - 667

Fln protein: MASEPVVSEMQAEKQVGEMMQSMKIQDSAQAPAVETNANIAKEAPGPEGSPSDATSSVTSLGDSTSTKDSELEQENVVENGLYYPPNNYYGFYYPGYEVVGNEWDEHGAYLGMDGLEIPYTGIQAENGPLLYYMPGYGYPQPAYNPYNAYFPGAMLGADGLLAHQPYYPSPMYQQPLTSPAYFQPPVAYGSEVTPAFSWESGLAVADRANGNTYNGSAAGGPRTSHSTAVVSSQVPYSKAIPPARKQNVALDSKGAAQPSEGLQSSHSVPAGQPNIHSIGPQSQSGRPVNKIPSHGSTGQTAALPKGYVPLGKVAGCSNQGKANVLYPNNAADFKPNGHEYLAGDRLKTRAKVNGNGNLDVLNEQNRGPRINKMRSPWLLPDANTGAHGLVENTENCVPEVNRDQFNLADFPTKYDNALFFVIKSYSEDDVHKSIKYNVWASTPNGNKRLDAAYQVARERSGGNPGSCPVF

Protein Length: 472

Fln nts: CGTCGTGACCTTGGCTGTCACGTCGTGACCTTGGCTGTCACTCAATTGTCCCGCGTGACTGACACCTCTTTTCTCTCTCTTTCTTTCTTTGTGTATTCTTATAAGTGGTTTTGTCGAGTCCGTTTCTGACGCTCAAGGCGGTTTTGCTTCGGCCTCTGGAAAACCTGCCGTCAAGGCGCTTGGATTTCTTTTCCGGCCTCTAAAGCGTTTACGAGGCAAACGAGCCCCTGGCCTCGCCATACGTCTGGTTAAGACCACAATCTTTCTTCTGTAAGAAGTGGCCTCCCCCTGGATCTCGGCGATTTTCTGGTTTTCAAGATTCCGGCCTGTTCGCAACTTAGGGTTTGAGTGGCTGTGCAGTTTGAAAACTGCTTTTGTTTCTGCTAGGGGTTTTGCGTTTATCGGAAGCCCGAGCATTGTAGAATGCCTTTGTCGGCCAGGTTTGGAACGGTGGTTTGAAGGGCTGTTTGGAAGGAAGCGGTATTCCGGGGTTTCTGGTTTCTTCGGAGCTGGAGGACGGTAGTCAGGGTTTTTACTGCGGTGATTTCTGGTGCAAATCA_-_ATGGCGTCTGAGCCCGTGGTCTCAGAGATGCAGGCTGAGAAACAGGTAGGCGAAATGATGCAGAGCATGAAAATTCAAGACTCTGCACAAGCTCCGGCAGTGGAAACGAACGCCAACATTGCGAAAGAGGCACCTGGGCCAGAGGGGAGCCCTTCTGATGCCACTTCTTCTGTAACATCACTGGGAGATTCTACCAGTACAAAGGACAGTGAGTTGGAGCAAGAAAATGTGGTGGAAAATGGGTTATATTATCCACCAAATAACTACTATGGCTTCTATTACCCAGGTTATGAAGTCGTAGGTAATGAATGGGATGAGCATGGTGCTTATCTTGGAATGGATGGCTTGGAGATTCCTTATACAGGAATCCAAGCTGAAAATGGACCCTTGTTATACTATATGCCAGGTTATGGTTACCCTCAGCCTGCTTATAATCCTTATAATGCATACTTTCCTGGTGCTATGCTTGGGGCTGATGGTCTTCTTGCTCATCAGCCATATTATCCCAGTCCTATGTATCAACAACCCCTCACTTCTCCAGCCTATTTTCAGCCACCTGTAGCATATGGATCGGAAGTTACACCAGCTTTTTCATGGGAGTCGGGACTTGCAGTTGCAGATCGGGCAAATGGAAATACTTACAATGGAAGTGCAGCAGGTGGGCCAAGAACAAGCCATTCCACAGCGGTTGTTTCCTCCCAGGTGCCATATTCGAAGGCTATACCACCAGCAAGGAAACAGAATGTTGCTTTGGATTCAAAAGGGGCAGCTCAGCCATCTGAGGGACTGCAATCATCACATTCAGTTCCTGCAGGTCAACCTAATATTCACTCTATAGGCCCTCAAAGCCAGAGTGGGAGGCCTGTGAATAAGATCCCATCACATGGTTCTACTGGTCAAACTGCAGCTTTACCAAAAGGCTACGTACCGTTAGGAAAAGTTGCAGGTTGTTCAAACCAAGGCAAGGCCAATGTTCTGTATCCTAATAATGCTGCAGATTTCAAACCCAATGGGCATGAATATCTTGCTGGTGACAGATTGAAGACACGAGCAAAGGTCAATGGAAATGGGAATTTGGATGTCCTTAATGAACAGAATAGAGGTCCTCGAATCAACAAGATGAGGAGCCCCTGGTTATTACCTGATGCGAATACTGGGGCTCATGGTCTGGTGGAAAATACTGAAAATTGTGTTCCTGAGGTAAATAGAGACCAATTTAACCTGGCAGATTTTCCCACAAAATATGATAATGCGTTGTTTTTTGTGATAAAATCTTATAGTGAGGATGATGTGCATAAGAGTATTAAATACAATGTTTGGGCAAGCACTCCAAATGGAAATAAAAGATTAGATGCGGCATATCAAGTTGCGCGGGAGAGGTCTGGTGGAAATCCTGGAAGCTGTCCGGTTTTT

Fln Alignment:

sp_v1.1_unigene13070___MMQSMKIQDSAQAPAVETNANIAKEAPGPEGSPSDATSSVTSLGDSTSTKDSELEQENVVEXXXXXXXXXXXXXXXXXXEVVGNEWDEHGAYLGMDGLEIPYTGIQAENXXXXXXXXXXXXXXXXXXXXXXXXXXXMLGADGLLAHXXXXXXXXXXXXLTSPAYFQPPVAYGSEVTPAFSWESGLAVADRANGNTYNGSAAGGPRTSHSTAVVSSQVPYSKAIPPARKQNVALDSKGAAQPSEGLQSSHSVPAGQP----NIHSIGPQSQSGRPVNKIPSHGSTGQTAALPKGYVPLGKVAGCSNQGKANVLYPNNAADFKPNGHEYLAGDRLKTRAKVNGNGNLDVLNEQNRGPRINKMRSPWLLP-DANTGAHGLVENTENCVPEVNRDQFNLADFPTKYDNALFFVIKSYSEDDVHKSIKYNVWASTPNGNKRLDAAYQVARERSGGNPGSCPVF
D5A886_______________MMQNMKIEDAAQAPAMEASANIAKEAPGPEGSPSDATSSVTSLGDSTSTKGSDLEQETVVENGLYYAPNNYYGFYYPGYEVPGNDWDEHGGFIGMDGVEVPYTGMQAENGSLVYYMPGYGYPQPAYNPYNTYFPGAMLGADGLLAHQPYYPSPIYQQPLTSPAYFPPPVAYGSEVPPAFSWESGLAVADRTNGNTFNGSAAGGPRTSHSTTAVS-QVPYSKVAPPARKQNAALDSKGSAQPSEGLQSSHPVPAGQPMPHGNVHSTVPPTQSARPVSKIPPHGSTVQAAALPKGYVPLGKVAGCSTQGKANVLYPNNATDFKPNGHEWLVGDRLKPRGKVNGNGNLDALNEQNRGPRISKMRNPWLSPVDANTGAHGLVENSENCAPEVNRDQFNRADFPTKYDNALFFVIKSYSEDDVHKSIKYNVWASTPNGNKRLDAAYQVAKERSGGNPGSCPVF

SNPs (tot: 13)

Position	A %	C %	G %	T %	Probability
302	11		88		0.923564
308		88		11	0.923564
442	33			66	0.997452
443			33	66	0.997452
448	66	33			0.997452
449	33	66			0.997452
452		33		66	0.997452
453		33	66		0.997452
1199		66		33	0.997452
1317			50	50	1.0
1400		87		12	0.992554
1818		14		85	0.993533
1904	40		60		1.0

SSRs (tot: 1)

Start position	End position	Sequence	Length
78	90	TCTT TCTT TCTT T	13

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain