SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene13007

Length: 2091 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene13007
CTATATTTCCGTCGTGACCTGGGCGGATCCCACATCATTTTGTGTCTGTTTCATTCTACGAGTGATTTACACTTCAGGCAAACAAAGCAACGCAAAAGGCAGCCGGGATATATAAAATATATATAAATTTCTCCCCTATTTTTTTGTTGCAAGGCAGCTCTGCGGATTGCGACTCTGCCGGATCTTGTTGGCACCGCCTTCTAAGCTTTTAGCACTTATCTGACCAGATAAGGCTCTGTAAAAGAGGGTTCTGAAAATAGACTTTTAAAGGACATCTACAAAAGGTCTAAATAGCACATCTATCCAAAAGGTAAAATGGGCGACACAGAAAATGTTCTTCCTCCCTCAAAGAAGAGGGTTGCAGGCAGACAACTTTCTAGAGATGATGATCCTGATGCAGAGGAAGATGCTTCTGGTCAAGAAGTTGGAACTTTTCAGAGGGCCAGTGAAGAGGTCCTTGCATCTAGAAGAATTGTGAAAGTCCGTCGCAATCCAACAGCATCTGGTGGAGCAGCCAATCCCTTTGCAGGGCTTCGTTTGGTTCCCTCTTTCGCACCATCTTCTGCCGTAGGTGAAACTGTGGCAAAGGCTCCTGAAACTACCCTTTCCACAGCATCTAGTGAGCAGCCTTCTATTGTGCAAGAGGAAGATATATCTCAGGCTAAAGATGACACTAATATAAGTGAAAACCCAAATAAGGCTACAGAAGTGCCTGAGCTGAAGGCTGTGGATGTAACTGTTAATGAGGTCAATGAAGTACCTGAGACTAAGTTAGTTGATGCAAATGTGAATGAGGATGATTCGAAAGATAAGGAAGAGGCACATCTGGAGCCAACAAAGGCTTCTAAGGAGAATGGGGAAGAAAATAAGGATGGCCCTGAAGAATCAATAGACAAACAGCATGTTGAGGCCATTGAAAGTAAGGACCCTAATAAGGAGGAGAGTACCAGGGAAGTGCCTAAAGATGGTAATCCTGAAAAAGAGCCATCTCCTGCTGTTAACTCATTCCAGCAACTTTCTGGTACCCGGAATGCATTCACAGGTATATCGGGTACTGGCTTTTCCGGCTCCTCCTTTTCGTTTGGATTATTCCCGAAAGCTGGTGATTCCAACACAGTGCCCTTTGGCTCCGCTTTCAGTCCTGGGATCTTTAGTGTCACAGGATCATTGTTAGGCACAAAGGCATCTAATAGTAATGGGTCATCACCATCAAGTACTAGCAATGGTAGTGCTTCTGTTCAGCTATTTGGAGGGTCAACAACTGACAATGTTACAATTAGTGGAAGTGGTTTGACAGCTTTGCAGGAAGTACCTGTAGAGACAGGTGAAGAAAAAGAGAAAGCAGTGTTCACAGCTGATGCTGCCTTGTTTGAGTATATTAGTGGGGGTTGGAAGGAACGAGGCAAGGGTGAAATTAAGGTCAATGTTTCTGCCACAGAGACGGGAAAAGCAAGGCTTGTGATGAGGTCCAAAGGTAATTACAGATTAGTCCTTAATGCCAATTTATTCCCAGACATGAAATTAACCAGTATGGACAAGCGAGGTATCAGTTTTGCTTGCATGAACAGTGCTAGTGAATCCAAGGCAGGCCTTTCCACATTTGCTCTGAAGTTTAGAGATAGTTCCATTGTTGAAGAGTTCCAGAGAGCTGTTGAAGCACACAAAGGCAGATCCTCAAGTAATTTGAAGACCCCAGAAAATTCTCCTAAGGCTTCTGAAGATTGAAGTTATTTAACATCAAGTTCAATTCAAGTCTATCCATACATATTTGGTCCAGAGTACAAGCACCTCAATAGTGGCCCTGTTTTTGTTATCATGTCGTCCTATGGTCTCTATTTTCTTAGATCTTATAGCATTTAGTTAATTCTTGCTAGATATTTTAGCTCTTCAAATAGGAGCAACATTCATTCACTTGGTCAGATTCTATCCTGTGAAAGGAAGCAAACTTTGGGAGAGCATGATACTTTTCATGGGTAGTTGGAATTTGTTTCAAGAGGCTATTCTCGGAAAAAATTATTTGAAGTGGTTTAGGAAACAGTATTTTCACTTGCGAGTATTCTATGCCTGTTTTTATTGCAAGCTTGCTTTCTT

Ace file of the UniGene sp_v1.1_unigene13007

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Ran-binding protein, putative n=1 Tax=Ricinus communis RepID=B9SQB9_RICCO	-	-	41%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	90%
Blast2go	ran-binding protein 1 domain-containing protein	-	-	58%

Source	GOs	Term	Type	Identity
Blast2go	intracellular transport	GO:0046907	Biological Process	58%
Blast2go	cytosol	GO:0005829	Cellular Component	58%
Blast2go	nucleus	GO:0005634	Cellular Component	58%

Source	InterPros	Term	Type	Identity
Blast2go	Ran binding domain	IPR000156	-	58%
Blast2go	Pleckstrin homology-like domain	IPR011993	-	58%
Blast2go	Nuclear pore complex, NUP2/50/61	IPR015007	-	58%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LNN8

Fln msg:

Fln protein: MGDTENVLPPSKKRVAGRQLSRDDDPDAEEDASGQEVGTFQRASEEVLASRRIVKVRRNPTASGGAANPFAGLRLVPSFAPSSAVGETVAKAPETTLSTASSEQPSIVQEEDISQAKDDTNISENPNKATEVPELKAVDVTVNEVNEVPETKLVDANVNEDDSKDKEEAHLEPTKASKENGEENKDGPEESIDKQHVEAIESKDPNKEESTREVPKDGNPEKEPSPAVNSFQQLSGTRNAFTGISGTGFSGSSFSFGLFPKAGDSNTVPFGSAFSPGIFSVTGSLLGTKASNSNGSSPSSTSNGSASVQLFGGSTTDNVTISGSGLTALQEVPVETGEEKEKAVFTADAALFEYISGGWKERGKGEIKVNVSATETGKARLVMRSKGNYRLVLNANLFPDMKLTSMDKRGISFACMNSASESKAGLSTFALKFRDSSIVEEFQRAVEAHKGRSSSNLKTPENSPKASED*

Protein Length: 471

Fln nts: CTATATTTCCGTCGTGACCTGGGCGGATCCCACATCATTTTGTGTCTGTTTCATTCTACGAGTGATTTACACTTCAGGCAAACAAAGCAACGCAAAAGGCAGCCGGGATATATAAAATATATATAAATTTCTCCCCTATTTTTTTGTTGCAAGGCAGCTCTGCGGATTGCGACTCTGCCGGATCTTGTTGGCACCGCCTTCTAAGCTTTTAGCACTTATCTGACCAGATAAGGCTCTGTAAAAGAGGGTTCTGAAAATAGACTTTTAAAGGACATCTACAAAAGGTCTAAATAGCACATCTATCCAAAAGGTAAA_-_ATGGGCGACACAGAAAATGTTCTTCCTCCCTCAAAGAAGAGGGTTGCAGGCAGACAACTTTCTAGAGATGATGATCCTGATGCAGAGGAAGATGCTTCTGGTCAAGAAGTTGGAACTTTTCAGAGGGCCAGTGAAGAGGTCCTTGCATCTAGAAGAATTGTGAAAGTCCGTCGCAATCCAACAGCATCTGGTGGAGCAGCCAATCCCTTTGCAGGGCTTCGTTTGGTTCCCTCTTTCGCACCATCTTCTGCCGTAGGTGAAACTGTGGCAAAGGCTCCTGAAACTACCCTTTCCACAGCATCTAGTGAGCAGCCTTCTATTGTGCAAGAGGAAGATATATCTCAGGCTAAAGATGACACTAATATAAGTGAAAACCCAAATAAGGCTACAGAAGTGCCTGAGCTGAAGGCTGTGGATGTAACTGTTAATGAGGTCAATGAAGTACCTGAGACTAAGTTAGTTGATGCAAATGTGAATGAGGATGATTCGAAAGATAAGGAAGAGGCACATCTGGAGCCAACAAAGGCTTCTAAGGAGAATGGGGAAGAAAATAAGGATGGCCCTGAAGAATCAATAGACAAACAGCATGTTGAGGCCATTGAAAGTAAGGACCCTAATAAGGAGGAGAGTACCAGGGAAGTGCCTAAAGATGGTAATCCTGAAAAAGAGCCATCTCCTGCTGTTAACTCATTCCAGCAACTTTCTGGTACCCGGAATGCATTCACAGGTATATCGGGTACTGGCTTTTCCGGCTCCTCCTTTTCGTTTGGATTATTCCCGAAAGCTGGTGATTCCAACACAGTGCCCTTTGGCTCCGCTTTCAGTCCTGGGATCTTTAGTGTCACAGGATCATTGTTAGGCACAAAGGCATCTAATAGTAATGGGTCATCACCATCAAGTACTAGCAATGGTAGTGCTTCTGTTCAGCTATTTGGAGGGTCAACAACTGACAATGTTACAATTAGTGGAAGTGGTTTGACAGCTTTGCAGGAAGTACCTGTAGAGACAGGTGAAGAAAAAGAGAAAGCAGTGTTCACAGCTGATGCTGCCTTGTTTGAGTATATTAGTGGGGGTTGGAAGGAACGAGGCAAGGGTGAAATTAAGGTCAATGTTTCTGCCACAGAGACGGGAAAAGCAAGGCTTGTGATGAGGTCCAAAGGTAATTACAGATTAGTCCTTAATGCCAATTTATTCCCAGACATGAAATTAACCAGTATGGACAAGCGAGGTATCAGTTTTGCTTGCATGAACAGTGCTAGTGAATCCAAGGCAGGCCTTTCCACATTTGCTCTGAAGTTTAGAGATAGTTCCATTGTTGAAGAGTTCCAGAGAGCTGTTGAAGCACACAAAGGCAGATCCTCAAGTAATTTGAAGACCCCAGAAAATTCTCCTAAGGCTTCTGAAGATTGA___AGTTATTTAACATCAAGTTCAATTCAAGTCTATCCATACATATTTGGTCCAGAGTACAAGCACCTCAATAGTGGCCCTGTTTTTGTTATCATGTCGTCCTATGGTCTCTATTTTCTTAGATCTTATAGCATTTAGTTAATTCTTGCTAGATATTTTAGCTCTTCAAATAGGAGCAACATTCATTCACTTGGTCAGATTCTATCCTGTGAAAGGAAGCAAACTTTGGGAGAGCATGATACTTTTCATGGGTAGTTGGAATTTGTTTCAAGAGGCTATTCTCGGAAAAAATTATTTGAAGTGGTTTAGGAAACAGTATTTTCACTTGCGAGTATTCTATGCCTGTTTTTATTGCAAGCTTGCTTTCTT

Fln Alignment:

sp_v1.1_unigene13007___MGDTENVLPPSKKRVAGRQLSRDDDPDAEEDASGQEVGTFQRASEEVLASRRIVKVRRNPTASGGAANPFAGLRLVPSFAPSSAVGETVAKAPETTLSTASSEQPSIVQEEDISQAKDDTNISENPNKATEVPELKAXXXXXXXXXXXXXXKLVDANVNEDDSKDKEEAHLEPTKASKENGEENKDGPEESIDKQHVEAIESKDPNKEESTREVPKDGNPEKEPSPAVNSFQQLSGTRNAXXXXXXXXXXXXXXXXXXXPKAGDSNTVPFGSAFSPGIFSVTGSLLGTKXXXXXXXXXXXXXXXXXXVQLFGGSTTDNVTISGSGLTALQEVPVETGEEKEKAVFTADAALFEYISGGWKERGKGEIKVNVSATETGKARLVMRSKGNYRLVLNANLFPDMKLTSMDKRGISFACMNSASESKAGLSTFALKFRDSSIVEEFQRAVEAHKGRSSSNLKTPENSPKASED
B8LNN8_______________MGDTENALPSSKKRVAGRQLSRDDDPDAEEDVSGQEVGTFQRASEEVLASRRIVKVRRNPTTSGGAANPFAALRLVPPPAPSSAAGETVAKSPETTLSTASSEQPSIVQEEDVPKAEDDTNIRENPNEATEVPELKAVDATVNEAKEIPETKLVDANVNEDDLKDKEEAQLEPTKASKENGEETKDGPEESVDTQPVEAIESKEPNKEESPREVPKDGTPEKEPSAAVNSFQQLSGTRNAFTGISGTGFSSSSFSFGLFSKAGDSNTAPFGSAFSPGTFSGTGSFLGAKAPASNGTSPSSTSNGGASVQLFGGPTTDNVTISGSGLTALQEVPVETGEEKENAVFTADAALFEYISGGWKERGKGELKVNVSATETGKARLVMRSKGNYRLVLNANLFPDMKLTSMDKRGISFACMNSASESKAGLSTFALKFRDSSMVEEFQRAVEAHKGRLSGNLKTPENSPKASED

SNPs (tot: 32)

Position	A %	C %	G %	T %	Probability
28	66	33			0.997452
29	33			66	0.997452
30		33	33	33	0.997753
31		33	33	33	0.997753
32		33	33	33	0.997753
33	33		33		0.997753
143	33			66	0.997452
144			33	66	0.997452
145			33	66	1.0
146			33	66	1.0
147			33	66	1.0
152		90	10		0.90298
866	88			11	0.923564
867	88		11		0.923564
868	87		12		0.992554
869			12	87	0.992554
948	16	83			0.994512
990		11		88	0.923564
1531			90	9	0.999842
1532			9	90	0.999842
1533	90		9		0.999872
1534			9	90	0.999872
1629	92	7			0.999664
1633		7		92	0.999664
1636	92	7			0.999664
1638		7	92		0.999664
1639	92	7			0.999664
1640	7		92		0.999664
1663	92		7		0.999532
1731		9		90	1.0
1861	92			7	0.999664
1901		92		7	0.999602

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain