SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene13001

Length: 2246 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene13001
TGGAGTGGTAGTTGACCGTACTGACAGATACACATCATTGAGAGTAGGTACATACCTAATGTATATGTTATGGTAATCCAAGTAGCCCACATAAGTGTTACAGCTCCAAACGTTCACCAGTCAAACGCCTGACATGGATTTGAATTCAGGCCGATTATTAAGACTATGGATTTTGATCTTGATATTGAGTTTGGCTACAAGCAGCAGCAGATACCAGGGCGATCTCCTTCGTTCTTTTCCGCCCCCGTTACCAATTCTTCCCATCCCCTCGGCGCCGCAGGTCAAATGGCAAAGGGGCGAAATGGCCATGTTCCTCCACTTCGGCATGAACACCTTCACAGACTCTGAATGGGGAAGCGGAGAAGCGGATCCCTGGCTCTTCAATCCCACTGAGTCCCTGGATGCTAGGCAATGGGTATCAGTGGCCAAAGAAGCCGGATTCTCCCACATCATACTGACTGCCAAGCACCACGACGGCTTCTGCCTCTGGCCCTCTGCTTACACCAATTACTCCGTCAGCAGCAGCCCCTGGAAGAATGGAACCGGGGACGTAGTGCAGGACTTGGCCGAGGCCGCCAGAGAAGTCGGAATAGGGCTGGGCCTCTACCTTTCCCCATGGGACCGTCACGAGTCCTCCTACGGCCGAACCTTAGGCTACAACGAGTATTACCTTGCCCTGCTGCGCGAGCTCCTCACCAACTATGGAACCATAGAGGAAGTGTGGTTGGACGGCGCCAAAGGGACGGACGCAAAGTCAATGGAGTATTATTTTGATGAATGGTTTAGTGTGATTCGTCAGCTGCAGCCCGAGGCCGTGATTTTCTCGGACGCCGGGCCCGACGTCAGATGGGTCGGTGACGAGGGCGGGGTAGCGGGTTCCACGTGCTGGTCGATGTTTAACAGCAGCGACGTCACCATTGGCCACACAGTTGAGCAATATTCTCGCCAAGGTGATCCTTATGGTACAAATTGGGTACCTCCAGAATGTGATGTGTCGATAAGATCAGGTTGGTTTTGGCACAAGAATGAGCAACCCAAAACACTAAATTCTTTGTTGGAAATATTTTACGAATCGGTGGGAAGAAATTGTATGCTATTGTTAAATGTGCCACCAAATAGCACAGGTCTTCTTGCTGAAGAAGATGTCCATGTGCTTCGTCAATTCAAAGATATTCTTACTTCAATATTTTCTATTAATTTAGCTGGAAATGCTGTTGTCACTGCAAGTAGTGTTCGTGGAAGCAGTTCCCAATTTGGACCAAGCCAGATCTTTAGTGATGATGTGTTTACCTATTGGGCTCCTGAAGAGGGGCAGACAACATGGTATCTACTCATAGACTTGAGAGATGTTGTGTCCTTCAATGTATTGTGCATAAAAGAAGCAATCCAACTAGGACAGAGAGTGAGTCAATACCACCTGGATATTTTAAAAGATGGTTCTTGGCATACAGTTGTAAATGGTACCACTATTGGATACAAAAGGCTAGAACGTTTTGAACTCATGAGATCTCAATTTTTGAAACTTACCATAGATCAGGCTCGAGTTGAACCATTGATTGCCTACTTTGGTCTCTACATGGACAACGTGTCCAGTATTCATGCCAGTGACATCGAGGGAAGAATCTCAAGTTCAGGATCCACACTCATGCCAGATAAACTTAACAGCTTGGATGTGAAAATACAATCAGTTTCTGGAAATATGAGCAAAATAGTTAGCTAAAATCTTTTTCATTGAAAGCGTGATATTTTTCATTATCCTTTAATATGGTTTTGTGTGACAAGAAAGCAGGAGGATAAGTTTTCTTGTCAATCTTGTTTTTAGGGATAATGCCTGTTTAGATTATTCAATTACTAATGAGATGCAGTCAATGACTGGGTTTGGATTGAAATTCAAGTTCATAGTTTGAATCTCCCTAAAGCTGAACTGTGGAGGCAATAGCAGTGAGCCAAGCAGAAAAGATTACTCCAGGTGGACAGAAGTACTTGTATGACTCGGGGGGATGTAGAGATTGGCAGGTGTTTTTATGGGGCAAGATTTTTAAGTCAAACAGCAACAATTTCTGTCATCATTCATGGGTTGTCTGCCTGGTATCATGGCAGAATGTACAGTATCGCTTCACTTCATTTTATTCTAGATTTAGCTTTGGCATTTTCTAGGAGTTGCTTTTGCACTCCCACTTTGTATTTGTACTGGTTGTATCCTTTAGTCCCATTGACCTATTTATGTCATTAAAATTATCTTAACC

Ace file of the UniGene sp_v1.1_unigene13001 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Alpha-L-fucosidase 1 n=3 Tax=Andropogoneae RepID=B6UDD6_MAIZE	-	-	63%
FL-Next	sp=Alpha-L-fucosidase 1; Arabidopsis thaliana (Mouse-ear cress).	-	-	62%
Blast2go	alpha-l-fucosidase 1	-	-	75%

Source	GOs	Term	Type	Identity
Blast2go	metabolic process	GO:0008152	Biological Process	75%
Blast2go	hydrolase activity, acting on glycosyl bonds	GO:0016798	Molecular Function	75%
Blast2go	protein binding	GO:0005515	Molecular Function	75%

Source	InterPros	Term	Type	Identity
Blast2go	Coagulation factor 5/8 C-terminal type domain	IPR000421	-	75%
Blast2go	Glycoside hydrolase, family 29	IPR000933	-	75%
Blast2go	Galactose-binding domain-like	IPR008979	-	75%
Blast2go	Glycoside hydrolase, subgroup, catalytic domain	IPR013781	-	75%
Blast2go	Glycoside hydrolase, superfamily	IPR017853	-	75%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: Q8GW72

Fln msg:

Fln protein: MDLNSGRLLRLWILILILSLATSSSRYQGDLLRSFPPPLPILPIPSAPQVKWQRGEMAMFLHFGMNTFTDSEWGSGEADPWLFNPTESLDARQWVSVAKEAGFSHIILTAKHHDGFCLWPSAYTNYSVSSSPWKNGTGDVVQDLAEAAREVGIGLGLYLSPWDRHESSYGRTLGYNEYYLALLRELLTNYGTIEEVWLDGAKGTDAKSMEYYFDEWFSVIRQLQPEAVIFSDAGPDVRWVGDEGGVAGSTCWSMFNSSDVTIGHTVEQYSRQGDPYGTNWVPPECDVSIRSGWFWHKNEQPKTLNSLLEIFYESVGRNCMLLLNVPPNSTGLLAEEDVHVLRQFKDILTSIFSINLAGNAVVTASSVRGSSSQFGPSQIFSDDVFTYWAPEEGQTTWYLLIDLRDVVSFNVLCIKEAIQLGQRVSQYHLDILKDGSWHTVVNGTTIGYKRLERFELMRSQFLKLTIDQARVEPLIAYFGLYMDNVSSIHASDIEGRISSSGSTLMPDKLNSLDVKIQSVSGNMSKIVS*

Protein Length: 530

Fln nts: TGGAGTGGTAGTTGACCGTACTGACAGATACACATCATTGAGAGTAGGTACATACCTAATGTATATGTTATGGTAATCCAAGTAGCCCACATAAGTGTTACAGCTCCAAACGTTCACCAGTCAAACGCCTGAC_-_ATGGATTTGAATTCAGGCCGATTATTAAGACTATGGATTTTGATCTTGATATTGAGTTTGGCTACAAGCAGCAGCAGATACCAGGGCGATCTCCTTCGTTCTTTTCCGCCCCCGTTACCAATTCTTCCCATCCCCTCGGCGCCGCAGGTCAAATGGCAAAGGGGCGAAATGGCCATGTTCCTCCACTTCGGCATGAACACCTTCACAGACTCTGAATGGGGAAGCGGAGAAGCGGATCCCTGGCTCTTCAATCCCACTGAGTCCCTGGATGCTAGGCAATGGGTATCAGTGGCCAAAGAAGCCGGATTCTCCCACATCATACTGACTGCCAAGCACCACGACGGCTTCTGCCTCTGGCCCTCTGCTTACACCAATTACTCCGTCAGCAGCAGCCCCTGGAAGAATGGAACCGGGGACGTAGTGCAGGACTTGGCCGAGGCCGCCAGAGAAGTCGGAATAGGGCTGGGCCTCTACCTTTCCCCATGGGACCGTCACGAGTCCTCCTACGGCCGAACCTTAGGCTACAACGAGTATTACCTTGCCCTGCTGCGCGAGCTCCTCACCAACTATGGAACCATAGAGGAAGTGTGGTTGGACGGCGCCAAAGGGACGGACGCAAAGTCAATGGAGTATTATTTTGATGAATGGTTTAGTGTGATTCGTCAGCTGCAGCCCGAGGCCGTGATTTTCTCGGACGCCGGGCCCGACGTCAGATGGGTCGGTGACGAGGGCGGGGTAGCGGGTTCCACGTGCTGGTCGATGTTTAACAGCAGCGACGTCACCATTGGCCACACAGTTGAGCAATATTCTCGCCAAGGTGATCCTTATGGTACAAATTGGGTACCTCCAGAATGTGATGTGTCGATAAGATCAGGTTGGTTTTGGCACAAGAATGAGCAACCCAAAACACTAAATTCTTTGTTGGAAATATTTTACGAATCGGTGGGAAGAAATTGTATGCTATTGTTAAATGTGCCACCAAATAGCACAGGTCTTCTTGCTGAAGAAGATGTCCATGTGCTTCGTCAATTCAAAGATATTCTTACTTCAATATTTTCTATTAATTTAGCTGGAAATGCTGTTGTCACTGCAAGTAGTGTTCGTGGAAGCAGTTCCCAATTTGGACCAAGCCAGATCTTTAGTGATGATGTGTTTACCTATTGGGCTCCTGAAGAGGGGCAGACAACATGGTATCTACTCATAGACTTGAGAGATGTTGTGTCCTTCAATGTATTGTGCATAAAAGAAGCAATCCAACTAGGACAGAGAGTGAGTCAATACCACCTGGATATTTTAAAAGATGGTTCTTGGCATACAGTTGTAAATGGTACCACTATTGGATACAAAAGGCTAGAACGTTTTGAACTCATGAGATCTCAATTTTTGAAACTTACCATAGATCAGGCTCGAGTTGAACCATTGATTGCCTACTTTGGTCTCTACATGGACAACGTGTCCAGTATTCATGCCAGTGACATCGAGGGAAGAATCTCAAGTTCAGGATCCACACTCATGCCAGATAAACTTAACAGCTTGGATGTGAAAATACAATCAGTTTCTGGAAATATGAGCAAAATAGTTAGCTAA___AATCTTTTTCATTGAAAGCGTGATATTTTTCATTATCCTTTAATATGGTTTTGTGTGACAAGAAAGCAGGAGGATAAGTTTTCTTGTCAATCTTGTTTTTAGGGATAATGCCTGTTTAGATTATTCAATTACTAATGAGATGCAGTCAATGACTGGGTTTGGATTGAAATTCAAGTTCATAGTTTGAATCTCCCTAAAGCTGAACTGTGGAGGCAATAGCAGTGAGCCAAGCAGAAAAGATTACTCCAGGTGGACAGAAGTACTTGTATGACTCGGGGGGATGTAGAGATTGGCAGGTGTTTTTATGGGGCAAGATTTTTAAGTCAAACAGCAACAATTTCTGTCATCATTCATGGGTTGTCTGCCTGGTATCATGGCAGAATGTACAGTATCGCTTCACTTCATTTTATTCTAGATTTAGCTTTGGCATTTTCTAGGAGTTGCTTTTGCACTCCCACTTTGTATTTGTACTGGTTGTATCCTTTAGTCCCATTGACCTATTTATGTCATTAAAATTATCTTAACC

Fln Alignment:

sp_v1.1_unigene13001___SAPQVKWQRGEMAMFLHFGMNTFTDSEWGSGEADPWLFNPTESLDARQWVSVAKEAGFSHIILTAKHHDGFCLWPSAYTNYSVSSSPWKNGTGDVVQDLAEAAREVGIGLGLYLSPWDRHESSYGRTLGYNEYYLALLRELLTNYGTIEEVWLDGAKGTDAKSMEYYFDEWFSVIRQLQPEAVIFSDAGPDVRWVGDEGGVAGSTCWSMFNSSDVTIGHTVEQYSRQGDPYGTNWVPPECDVSIRSGWFWHKNEQPKTLNSLLEIFYESVGRNCMLLLNVPPNSTGLLAEEDVHVLRQFKDILTSIFSINLAGNAVVTASSVRG-SSSQFGPSQIFSDDVFTYWAPEEGQTTWYLLIDLRDVVSFNVLCIKEAIQLGQRVSQYHLDILKDGS--WHTVVNGTTIGYKRLERF-ELMRSQFLKLTIDQARVEPLIAYFGLYMDNVS
Q8GW72_______________SSQQLQWQLGSMAMFLHFGPNTFTDSEWGTGKANPSIFNPTH-LNASQWVQIAKDSGFSRVILTAKHHDGFCLWPSEYTDYSVKSSQWRNGAGDVVAELASAAKEAGIGLGLYLSPWDRHEQCYGKTLEYNEFYLSQMTELLTKYGEIKEVWLDGAKGDGEKDMEYFFDTWFSLIHQLQPKAVIFSDAGPDVRWIGDEAGLAGSTCWSLFNRTNAKIGDTEPSYSQEGDGYGQDWVPAECDVSIRPGWFWHASESPKPAVQLLDIYYNSVGRNCLFLLNVPPNSSGLISEQDIKVLEEFSEMKNSIFSNNLARKAFVNSSSIRGDQSSQFGPKNVLEEGLDKYWAPEENQNEWVLYLEFKDLVSFNVLEIREPIHMGQRIASFHLETRKTGSGEWERVVSGTTVGNKRLLRFLNVVESRSLKLVVDKARTDPLISYLGLYMDKFS

SNPs (tot: 33)

Position	A %	C %	G %	T %	Probability
68	66			33	0.997452
394	62	37			1.0
439		14	85		0.993533
477	50			50	1.0
528			16	83	0.994512
533	83		16		0.994512
536	16			83	0.994512
537	83		16		0.994512
538		16		83	0.994512
539		16		83	0.994512
540	16			83	0.994512
541	16			83	0.994512
543		83	16		0.994512
547			16	83	0.994512
549		14		85	0.993533
550			14	85	0.993533
608	20		80		0.995493
609		20	80		0.995493
611			20	80	0.995493
615	20			80	0.995493
617	80		20		0.995493
618	80			20	0.995493
620	20			80	0.995493
621		20		80	0.995493
644		66		33	1.0
986	25		75		0.996473
1230	66		33		0.997452
1620		20	80		0.995493
1915	20			80	0.995493
1970		50		50	1.0
2159	66	33			0.997452
2161		33		66	0.997452
2162		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain