SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene12997

Length: 1191 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene12997

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Unassigned protein	-	-	-
FL-Next	tr=Putative uncharacterized protein; Ricinus communis (Castor bean).	-	-	62%
Blast2go	conserved hypothetical protein [Ricinus communis]	-	-	75%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: B9SJA4

Fln msg:

Fln protein: MEMEMETEGIASIALLQSGSISGHFIPHTNATRCFAIYGTQLPCERECSRGEDYRMIKLTIFDYLSKKEQDVIVECRGQDAARFQNADHVHGWEEDVICMVEKSKEKHNNLFISFECGTLKADKQAKDHIHRYLPHLIGHEAVVNIGTMKIRGLNFNSDDHQTNKTSTLKSNDMDVELFYHRKCFKLSTRKQCKVWTISFSC*

Protein Length: 204

Fln nts: ATGGGGGATTTAAACAAAAAACAGACGATGCCGGCAAAGGGCAGGGAGGAGTGGCACTCTCTTTCAAATCAAATCCTGAGATGCAAGATCGCCCCACGGGCTTAAGAAGTTGAAGCAGGAGAAGGGTTTATAGAGGTCGAG_-_ATGGAGATGGAAATGGAAACGGAGGGAATTGCATCGATCGCATTATTACAATCCGGCTCCATATCAGGCCATTTCATTCCTCACACCAATGCTACTCGCTGTTTCGCGATTTATGGAACTCAATTGCCGTGTGAGAGAGAGTGTAGTAGAGGTGAAGATTATCGAATGATTAAGCTTACAATATTTGACTATTTGAGCAAGAAGGAACAAGATGTCATAGTGGAGTGCAGAGGCCAAGATGCTGCTCGATTCCAGAATGCTGATCATGTCCATGGGTGGGAGGAGGATGTCATCTGCATGGTTGAAAAGAGCAAAGAGAAGCACAATAATCTGTTCATTTCCTTTGAATGTGGGACTTTGAAAGCTGATAAGCAAGCCAAGGACCATATCCATCGTTATTTGCCTCACCTGATTGGACATGAAGCTGTAGTGAACATCGGAACCATGAAAATAAGAGGACTGAATTTCAACTCAGATGATCACCAGACAAACAAGACTAGCACATTGAAGTCCAATGATATGGATGTAGAGCTATTTTATCACAGGAAATGCTTCAAGTTGTCAACAAGAAAACAATGTAAAGTGTGGACTATCTCATTCTCCTGTTGA___AAGTAGCTCCACAAATGATCAAAAGCTGTTGAAACGGTTGGGACACAGTAATCAAGAATCAAGCAATCCTGATGAAGCTGTAATTAGGCAATTGCTGGCAGAGGAACTGCAGGCAGATAGTAATTCTGAAATCATCCCCGAAAATAAATGGCAGCATAGCTCGTCTGGCTGGAGAATCAAGAAGTAAGTCTTATATTGTACTGAAGAATGATGGTTCCTGTCGATACTATTCGAAGGTGGCAGTCATGGTCTCAAATTGTATGCAACGAATACCGTGTAAAGCACTTCTCCGGCAAGGGAAGGTTGTTTTTGCTGTTGCATGGAGTTTTTCAGACATATAAAGACCTTCAGAATATGTCAAAGCTCAGAAATTGGTTCTGTTTTGGGACGTGCGATTTTTTCCCAGCATGGTCTAAAATATTTTTATGGAGATGGCACTGC

Fln Alignment:

sp_v1.1_unigene12997___IASIALLQSGSISGHFI--PHTNATRCFAIYGTQLPCERECSRGEDYRMIKLTIFDYLSKKEQDVIVECRGQDAARFQNADHVHGWEEDVICMVEKSKEKHNNLFISFECGTLKADKQAKDHIHRYLPHLIGHEAVVNIGTMKIRGLNFNSDD
B9SJA4_______________MASIALLPCGSISGHFIQLPHSI---CYGLHGTELACERECSRGEDYRLIKLTIIDYNSGKEQAVVVECRGHDAARFHNIDHAHGWEKDVVAMAEE-KHGKKKIFVSFVCETLKADKAAEEHIRKFMPKLAGLDAVVNIGKMRISGLDFEADD

SNPs (tot: 28)

Position	A %	C %	G %	T %	Probability
45		33	66		0.997452
519		85	14		0.993533
787			25	75	0.996473
896			16	83	0.994512
898	83	16			0.994512
899	83	16			0.994512
905	83			16	0.994512
910		16		83	0.994512
911	83			16	0.994512
912		16	83		0.994512
913	16	83			0.994512
940	75	25			1.0
944			25	75	1.0
948		25		75	1.0
949	75	25			1.0
953			25	75	1.0
958	75			25	1.0
959	66	33			1.0
961	88			11	0.923564
962	66	33			1.0
964		22	77		0.999999
966		11		77	0.968132
967		11	88		0.923564
968			88	11	0.923564
970			11	88	0.923564
971		88	11		0.923564
977	11		88		0.923564
978	88	11			0.923564

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain