SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene12981

Length: 2625 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene12981
GCCCATTGCTCCTTCTCCTTACGAAAAACCGAGGAGCTTTTCGATCCGCACTGACTCTTGTAGGTTTTGATGGTAATGGACTCTATCATGATTTGAGCTTCACAAAAGGCTATCCTCAGCAGGTAATTGATCCATGGTCACATGGGGCACCGGGGCGTAACATGGAGGCAACCTTGAGATGCCAGAACCGCGGAGGCAGTAGGATGATTATAGATTATAAGCCCTGAAAAACAGAGGCACATTCAATTTCGGTTTTGAGCCTTGGATTGGGGCTGGAGATCTCTTAGGGTGTCTTCCGGGGCCGTCCTGATTAAGAGGGGACTGTAATATATATATATATATCTATAAATGTATTTACACAGACGATTAATTTTATATACTGTTGTTGCAGAAGATATGATAACATTGGGGGATGTGACAGCTGGAAGATTGAGTAGGGTTAGGGTTAATTAGGGTTAAGAAATTTAAGGCAGGTCACGGCATGGCAGGTCAAATATTGCCAACGCATAGGGAACCAGGGGGGGTCCAGCAGCGGAATTAATACGACCATCGTTTTGGTGCCAACGCGCTTCGTCTGGCCCCATGGAGGTCGTCGCGTATTCCTTGTTGGTTCCTTCACCAGGTGGGATGATAGGTTGCCAATGTCACCTGTGGAGGGCTGTCCATCTGTATTCCAAGCTATCTGCAGCTTGCCCCAGGCTTACACCAGTACAAATTTATTGTTGATGGAGTTTGGAGACATGATGACCAAAGTCCCTTCATGATGGATGCCCTTGGTGGTATCAACAATTACTTGCATGTTAGGGCCCCGGATCTTGTACCTACTCCCCAAATCATGGAAATGCCAAGCTTAGGAGCTGGCATGGAAGTAGATCATGATCCATTTCGACAATTGGGAGCACTTCAAAGTATATCAGAAGTAGAAATAGATTCATCACGACAAAAAATTCGGGCATTCTTATCTGCACATACTGTTTATGAATTGATTCCTGAGTCAGGCAAGGTTGTGGTTCTGGATTCTAGTTTACCTGTGAAGGAGGCTTTTCATGTTCTGTATGACCAGGGTATTTCAGTGGCTCCTTTATGGGATTCCAATATTGGACAGTTTGTTGGCATGCTTAGTGCTTCGGACTTCATAATAATCCTTAGAGAGCTTGGAAGTAACGGGGCGATTCTGTCTGAAGAAGAACTTGAGACACACACGATTGCTGCTTGGAAGAATGAGAAAATGCATATTAACGAACAGGTCAATGGGCCATTGGCATCGTTAGGGAGGTCCCTTATTTCTGTAAGTCCTGATGATTCTTTGAGGGTTGTTGCAGAGAAAATTCTGCAGCATGAGATTGCAACTGTGCCAGTCATATGCCCATCAGCAGGAGATGGCTCAGCCCCACAATTATTGCATTTGGCATCTCTTCCTGGAATACTGAAAAGCATTTGCAGATACTTCAGATCTGCCTCTAGTATGTTGCCAGTTCTGCAGCAGCCCATCTGTGCTTTGCGCATAGGTATCTGGATCCCAGAAATTGGGGAAGCTGGTGGTCGTTCATTAGCTATGCTTCGGCCAGATGCACCTCTGACAAGTGCATTTTCTCTGTTGCTTCAAGCTCGTGTTAGTGCGATCCCTATTGTTGATGACAATGGTTCCTTGCTGGATATATATGCTAGAAGTGACGTTACAGCTCTGGCAAAAGACAAAATGTATGTACGAGTGAGGCTTAATGAATTGACCATTCACAGGGCTCTGCAGTCGTCTCATGATGGAATGTCCCCTGGAGTTCGGTGTCATATGTGTTTACGATCTGACACCCTCCAAATGGTCATGGAGCAGTTAGCTGTTCCTGGTGTACGGCGGCTTATATGCGTGGAAGCTGGTAGCAACCGTGTTGAAGGTATTATCTCCTTGAGGGACGTCTTTAACTTTCTTTTCAGATAGTTTCGAACTCTCAAATTTTTCCGTCTACTGGTTGGGGCAATGTGTAACGTCAATTTTGGCTCTTACAGCTATTTGTGGCTGATTAGAGCACACCTTGTGATTTTATCCTAGTGAGCTAGGTTCTATATATTTGTTTTCCTTTACACGAGGAAACATTGGGGCATATTTTAATTTATGTGCAGTGCATTCAATTTTAGTGTTTCCCATAGTTTGCATCCATGATAAAGATGGATCTGTAAGTGAAGGATGAAGTTCCCACCTTGGTATCTATCACCATCAACGTTTGTCAAGTATAGCCAGTGTACTATTTCTCATGAATAGTATTTATGTTACCGTTCTGATAGTCTGCATGTCAAGAACAATATAAGGGTGGCGTTGTAGATCAAAGGATGGAGTTTCCTCACTCGGGATCTTATGTTCAGTGCTGAGATAAAATATGATGGATAGTATTTGCATCACTCACTAAAGTATTCATATTCTTTTAAAAGTTGTTGTGACAGTAACACAAAGTGTTACTATAAGTAAATAAACAGATGTTCTTAGAGGGAATAAAATAATTTGAACGAGGATACAGATTTCTTGATTTCAAGTGAGTGGAACATATTGTGAATTGAAATACAAAGCCATATTGAAATTGTAAAATTCATAGCTTTTAAATGAAGTAATCCTTAGGAAACATGTTTACCTTT

Ace file of the UniGene sp_v1.1_unigene12981

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	SNF4; SNF4 (HOMOLOG OF YEAST SUCROSE NONFERMENTING 4); protein kinase activator	-	-	57%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	37%
Blast2go	protein	-	-	71%

Source	GOs	Term	Type	Identity
Blast2go	cellular response to glucose starvation	GO:0042149	Biological Process	71%
Blast2go	protein kinase activator activity	GO:0030295	Molecular Function	71%
Blast2go	protein binding	GO:0005515	Molecular Function	71%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Cystathionine beta-synthase, core	IPR000644	-	0.0	71%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: B8LP92

Fln msg: Separated hits, possible frame ERROR between 644 and 689, Unexpected STOP codon in 5 prime region, your sequence is longer than subject: 496 - 292

Fln protein: LGLRNLRQVTAWQVKYCQRIGNQGGSSSGINTTIVLVPTRFVWPHGGRRVFLVGSFTRWDDRLPxxxxxxxxxxxxxxxxLAPGLHQYKFIVDGVWRHDDQSPFMMDALGGINNYLHVRAPDLVPTPQIMEMPSLGAGMEVDHDPFRQLGALQSISEVEIDSSRQKIRAFLSAHTVYELIPESGKVVVLDSSLPVKEAFHVLYDQGISVAPLWDSNIGQFVGMLSASDFIIILRELGSNGAILSEEELETHTIAAWKNEKMHINEQVNGPLASLGRSLISVSPDDSLRVVAEKILQHEIATVPVICPSAGDGSAPQLLHLASLPGILKSICRYFRSASSMLPVLQQPICALRIGIWIPEIGEAGGRSLAMLRPDAPLTSAFSLLLQARVSAIPIVDDNGSLLDIYARSDVTALAKDKMYVRVRLNELTIHRALQSSHDGMSPGVRCHMCLRSDTLQMVMEQLAVPGVRRLICVEAGSNRVEGIISLRDVFNFLFR*

Protein Length: 497

Fln nts: GCCCATTGCTCCTTCTCCTTACGAAAAACCGAGGAGCTTTTCGATCCGCACTGACTCTTGTAGGTTTTGATGGTAATGGACTCTATCATGATTTGAGCTTCACAAAAGGCTATCCTCAGCAGGTAATTGATCCATGGTCACATGGGGCACCGGGGCGTAACATGGAGGCAACCTTGAGATGCCAGAACCGCGGAGGCAGTAGGATGATTATAGATTATAAGCCCTGAAAAACAGAGGCACATTCAATTTCGGTTTTGAGCCTTGGATTGGGGCTGGAGATCTCTTAGGGTGTCTTCCGGGGCCGTCCTGATTAAGAGGGGACTGTAATATATATATATATATCTATAAATGTATTTACACAGACGATTAATTTTATATACTGTTGTTGCAGAAGATATGATAACATTGGGGGATGTGACAGCTGGAAGATTGAGTAGGGTTAGGGTTAATTAGGGTTAAGAAATTTAAGGCAGGTCACGGCATGGCAGGTCAAATATTGCCAACGCATAGGGAACCAGGGGGGGTCCAGCAGCGGAATTAATACGACCATCGTTTTGGTGCCAACGCGCTTCGTCTGGCCCCATGGAGGTCGTCGCGTATTCCTTGTTGGTTCCTTCACCAGGTGGGATGATAGGTTGCCAATxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGCTTGCCCCAGGCTTACACCAGTACAAATTTATTGTTGATGGAGTTTGGAGACATGATGACCAAAGTCCCTTCATGATGGATGCCCTTGGTGGTATCAACAATTACTTGCATGTTAGGGCCCCGGATCTTGTACCTACTCCCCAAATCATGGAAATGCCAAGCTTAGGAGCTGGCATGGAAGTAGATCATGATCCATTTCGACAATTGGGAGCACTTCAAAGTATATCAGAAGTAGAAATAGATTCATCACGACAAAAAATTCGGGCATTCTTATCTGCACATACTGTTTATGAATTGATTCCTGAGTCAGGCAAGGTTGTGGTTCTGGATTCTAGTTTACCTGTGAAGGAGGCTTTTCATGTTCTGTATGACCAGGGTATTTCAGTGGCTCCTTTATGGGATTCCAATATTGGACAGTTTGTTGGCATGCTTAGTGCTTCGGACTTCATAATAATCCTTAGAGAGCTTGGAAGTAACGGGGCGATTCTGTCTGAAGAAGAACTTGAGACACACACGATTGCTGCTTGGAAGAATGAGAAAATGCATATTAACGAACAGGTCAATGGGCCATTGGCATCGTTAGGGAGGTCCCTTATTTCTGTAAGTCCTGATGATTCTTTGAGGGTTGTTGCAGAGAAAATTCTGCAGCATGAGATTGCAACTGTGCCAGTCATATGCCCATCAGCAGGAGATGGCTCAGCCCCACAATTATTGCATTTGGCATCTCTTCCTGGAATACTGAAAAGCATTTGCAGATACTTCAGATCTGCCTCTAGTATGTTGCCAGTTCTGCAGCAGCCCATCTGTGCTTTGCGCATAGGTATCTGGATCCCAGAAATTGGGGAAGCTGGTGGTCGTTCATTAGCTATGCTTCGGCCAGATGCACCTCTGACAAGTGCATTTTCTCTGTTGCTTCAAGCTCGTGTTAGTGCGATCCCTATTGTTGATGACAATGGTTCCTTGCTGGATATATATGCTAGAAGTGACGTTACAGCTCTGGCAAAAGACAAAATGTATGTACGAGTGAGGCTTAATGAATTGACCATTCACAGGGCTCTGCAGTCGTCTCATGATGGAATGTCCCCTGGAGTTCGGTGTCATATGTGTTTACGATCTGACACCCTCCAAATGGTCATGGAGCAGTTAGCTGTTCCTGGTGTACGGCGGCTTATATGCGTGGAAGCTGGTAGCAACCGTGTTGAAGGTATTATCTCCTTGAGGGACGTCTTTAACTTTCTTTTCAGATAGTTTCGAACTCTCAAATTTTTCCGTCTACTGGTTGGGGCAATGTGTAACGTCAATTTTGGCTCTTACAGCTATTTGTGGCTGATTAGAGCACACCTTGTGATTTTATCCTAGTGAGCTAGGTTCTATATATTTGTTTTCCTTTACACGAGGAAACATTGGGGCATATTTTAATTTATGTGCAGTGCATTCAATTTTAGTGTTTCCCATAGTTTGCATCCATGATAAAGATGGATCTGTAAGTGAAGGATGAAGTTCCCACCTTGGTATCTATCACCATCAACGTTTGTCAAGTATAGCCAGTGTACTATTTCTCATGAATAGTATTTATGTTACCGTTCTGATAGTCTGCATGTCAAGAACAATATAAGGGTGGCGTTGTAGATCAAAGGATGGAGTTTCCTCACTCGGGATCTTATGTTCAGTGCTGAGATAAAATATGATGGATAGTATTTGCATCACTCACTAAAGTATTCATATTCTTTTAAAAGTTGTTGTGACAGTAACACAAAGTGTTACTATAAGTAAATAAACAGATGTTCTTAGAGGGAATAAAATAATTTGAACGAGGATACAGATTTCTTGATTTCAAGTGAGTGGAACATATTGTGAATTGAAATACAAAGCCATATTGAAATTGTAAAATTCATAGCTTTTAAATGAAGTAATCCTTAGGAAACATGTTTACCTTT

Fln Alignment:

sp_v1.1_unigene12981___VPTRFVWPHGGRRVFLVGSFTRWDDRLPMxxxxxxxxxxxxxxxLAPGLHQYKFIVDGVWRHDDQSPFMMDALGGINNYLHVRAPDLVP
B8LP92_______________IPTMITWSYGGNDVAVEGSWDNWTLRKPLxxxxxxxxxxxxxxxLPSGVYQYKFIVDGEWRYVPDLPWITDETGNVKNILDVQ--DYVP

SNPs (tot: 51)

Position	A %	C %	G %	T %	Probability
532	83		16		0.994512
533			83	16	0.994512
538	83	16			0.994512
541	83		16		0.994512
542	83		16		0.994512
544	83		16		0.994512
545		83		16	0.994512
546		16	83		0.994512
702		83		16	0.994512
704		16		83	0.994512
705	83		16		0.994512
1950		66		33	1.0
2036		90	10		0.90298
2038		20		80	0.999996
2039	10		90		0.90298
2043		10		90	0.90298
2044		10		90	0.90298
2048			10	90	0.90298
2049		90	10		0.90298
2055		10	90		0.90298
2056	90		10		0.90298
2069	90		10		0.90298
2070			10	90	0.90298
2071	90	10			0.90298
2073			11	88	0.923564
2075		11	88		0.923564
2076	11			88	0.923564
2077		11		88	0.923564
2079		11		88	0.923564
2080	12	87			0.992554
2106		11		88	0.923564
2107	88		11		0.923564
2109		14		85	0.993533
2110			14	85	0.993533
2112	85		14		0.993533
2114		14		85	0.993533
2115		14		85	0.993533
2123	85			14	0.993533
2129		14		85	0.993533
2237	88	11			0.999952
2239		88		11	0.999952
2248		12		87	0.999964
2249	87			12	0.999964
2251			12	87	0.999964
2252			12	87	0.999964
2256	87		12		0.999964
2258		12	87		0.999964
2260	87	12			0.999964
2264		12		87	0.999964
2317	16		83		0.999991
2417		12		87	0.992554

SSRs (tot: 1)

Start position	End position	Sequence	Length
327	342	AT AT AT AT AT AT AT AT	16

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain