SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene12950

Length: 2248 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene12950
TGTCACTCATTTTCCGAAGAAGCGCTCGCCATATTCAGCGAAAGTACATTCTTCAATCCAATAACAATGTCCGCCCACTTGGCGACTCAAACATACACAGATCCCCACTAAGCCAATTCCAATCCCATTCAATCTTGTTAACTAGCAATCCCAATGGGAATGGGTCTTCATACAGACCGGGACCAGGTTTGCGTTTAATTCGTCCATTCTCCTCCTCCGCAGGAGATGCTGATTCGGAGTTTAGGAAGTATGTGGGCTATGCAGTTCTGCTAATCGGATGCGGTGCTGCCACTTACTACACATTCCCATACCCACCCCCGAAGCCATCAGACGAGAGCTCTTCCACTTCAGCAGAAGAGGAACACACCAAATGGAATCGGTCTTAATGCTGAGGGGATGATTAATTTCGCTCTCATGGATAAAGTTTTGCACGTTGATGAAAAGAACCAAAGGGTAACGGTCCAGGCCGGTGTGAGGGTGTCGCAGCTTGTGGACGAGCTCAAGGATCACGGGCTTACACTGCAGAACTTCGCATCCATTAGGGAGCAGCAGATTGGTGGTATCATTCAGGTTGGGGCTCATGGAACTGGAGCACGTTTACCACCTATTGATGAACAGGTAGTTAGTATGAAGCTGGTTACCCCAGGTAAGGGAACAATAGACATATCTGCTGAAAAGGATCCTGAGGTGTTTTATCTGGCTCGTTGTGGGCTGGGAGGACTTGGAATTGTAGCTGAAATCACTCTCCAATGTGTTCCAAGACATAAACTTGTGGAGCACACATTTGTCTCAAATATTAAAGAAGTGCGGAAAAGGCACAAGAAATGGTTATCACAAAATAAGCATTTAAGATATATGTGGATTCCTTACACAGATGCAGTAGTTGTAGTGCAGTGTAATCCACTTCCCGACGGAAAAGATCCTCCAAAGTTTACCCCTAAATATGGAAGGGATGAAGCTTTGCAGCATGTTCGAGATCTCTACAAAGATCTTCTAAGGGAACACAAGATTGAAGAAGCAAGCACAGGAAAAACCAGTGATGATAAAGCAAGCTCCCAAGTCTGGCCTAGCACTGAGACTGTGACAAATATTAATGAACTTTCTTTTATGGAACTTAGGGACAACCTTCTTTCGTTAGATCCTTTAAATAAAGACCATGTCATCCGAGTAAACTTAGCTGAGGCTGAATACTGGAAAAAGTCTGAAGGATACAGAGTTGGATGGAGTGATGAGATCTTGGGTTTTGATTGTGGTGGACAACAATGGGTTTCTGAGGTTTGTTTACCTGTTGGCACTTTAGCCAAGCCTAACTTGAAAGACCTTGACTACATGGATGAGGTTCTGAAGTTGATAAAAAAGGAAAATATACCAGCACCAGCTCCCATTGAGCAGCGATGGACAGCTTGCAGCAGGAGCCTCATGAGCCCAGCCTCGAGCTCATTACCAGATGCTTTGTTTTCTTGGGTTGGAATCATTATGTACATGCCAACTACAGAGGCCAATCAGAGAAAAGCAATAACAACTGAATTCTTTAGATACAGGCTTGCTGCACAAAGACAGCTATGGAATAACTATTCTGCATATGAACACTGGGCCAAGATTGAGGTTCCAGATAACGAAGAAGAACTTGCTTGGCTGCATGAAAGGCTTCGCAAACGATTTCCAGTGGACTTGTACAATAAGGCTCGTAAAGAGTTGGACCCAAATCAGATTCTTTCAAATGATCTTCTTGAAAAATTGTTTCCCTTGTCGTTGAATAAGTCTGAAGCTTGAACAACTCTTTTGGTTTAAGATAGGTTCTTCTGCAACCTCATCCGTGCATTGGATGTAGATATACATTTTCATTTTCACATTAAACATTTTAAAGCTATGTTAATAATTTAAGATCTGTTTCGTTCGCTTTCTACATGGTTCTATTTTTTAGGATATTCAGTGTTCCACAAGGGACACATTTCCGAGCGTCCTGGTCTTGCCCCTTGCATCTTCTGCATCTCTTAAGTTTGGGAGACTAAAGGATGCCTCAGGAACGTTCCTTGCCATCCTCGACTTGCAAGCTACAGCATGGCGATTACCCCCCCTGATCACATGGGGTATGCTTAGGTGTCCCCAATAGGGTCTAATGCTCCTGTCAAAAGAAAACAATATAAATGTAGTGGTTTCGTTTGTTTCACTTGATGTGGGGAAGGCTATGACAACTCATCTTCAACTATGGAATTCCTACTAGGGAACATGTACCAGGAAATCACAG

Ace file of the UniGene sp_v1.1_unigene12950

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	L-galactono-1,4-lactone dehydrogenase 1, mitochondrial n=3 Tax=Oryza sativa RepID=GLDH1_ORYSJ	-	-	67%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	31%
Blast2go	l-galactono- -lactone dehydrogenase	-	-	83%

Source	ECs	Term	Type	e value	Identity
Blast2go	L-galactonolactone dehydrogenase.	EC:1.3.2.3	-	0.0	83%

Source	KEGGs	Term	Type	Identity
Blast2go	Ascorbate and aldarate metabolism	00053		83%
Blast2go	Metabolic pathways	01100		83%
Blast2go	Biosynthesis of secondary metabolites	01110		83%
Blast2go	D-arabinono-1,4-lactone oxidase.	EC:1.1.3.37	-	83%
Blast2go	L-gulonolactone oxidase.	EC:1.1.3.8	-	83%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Ascorbate and aldarate metabolism	00053		0.0	83%
Blast2go	Metabolic pathways	01100		0.0	83%

Source	GOs	Term	Type	Identity
Blast2go	oxidation-reduction process	GO:0055114	Biological Process	83%
Blast2go	L-ascorbic acid biosynthetic process	GO:0019853	Biological Process	83%
Blast2go	L-gulono-1,4-lactone dehydrogenase activity	GO:0080049	Molecular Function	83%
Blast2go	galactonolactone dehydrogenase activity	GO:0016633	Molecular Function	83%
Blast2go	D-arabinono-1,4-lactone oxidase activity	GO:0003885	Molecular Function	83%
Blast2go	L-gulonolactone oxidase activity	GO:0050105	Molecular Function	83%
Blast2go	flavin adenine dinucleotide binding	GO:0050660	Molecular Function	83%
Blast2go	membrane	GO:0016020	Cellular Component	83%
Blast2go	plastid	GO:0009536	Cellular Component	83%
Blast2go	mitochondrion	GO:0005739	Cellular Component	83%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: D5A9T9

Fln msg: query STOP codon too far from subject stop. Distance to subject end: 54 aas, putative chimeric sequence, your sequence is shorter than subject: 459 - 542

Fln protein: MINFALMDKVLHVDEKNQRVTVQAGVRVSQLVDELKDHGLTLQNFASIREQQIGGIIQVGAHGTGARLPPIDEQVVSMKLVTPGKGTIDISAEKDPEVFYLARCGLGGLGIVAEITLQCVPRHKLVEHTFVSNIKEVRKRHKKWLSQNKHLRYMWIPYTDAVVVVQCNPLPDGKDPPKFTPKYGRDEALQHVRDLYKDLLREHKIEEASTGKTSDDKASSQVWPSTETVTNINELSFMELRDNLLSLDPLNKDHVIRVNLAEAEYWKKSEGYRVGWSDEILGFDCGGQQWVSEVCLPVGTLAKPNLKDLDYMDEVLKLIKKENIPAPAPIEQRWTACSRSLMSPASSSLPDALFSWVGIIMYMPTTEANQRKAITTEFFRYRLAAQRQLWNNYSAYEHWAKIEVPDNEEELAWLHERLRKRFPVDLYNKARKELDPNQILSNDLLEKLFPLSLNKSEA*

Protein Length: 460

Fln nts: TGTCACTCATTTTCCGAAGAAGCGCTCGCCATATTCAGCGAAAGTACATTCTTCAATCCAATAACAATGTCCGCCCACTTGGCGACTCAAACATACACAGATCCCCACTAAGCCAATTCCAATCCCATTCAATCTTGTTAACTAGCAATCCCAATGGGAATGGGTCTTCATACAGACCGGGACCAGGTTTGCGTTTAATTCGTCCATTCTCCTCCTCCGCAGGAGATGCTGATTCGGAGTTTAGGAAGTATGTGGGCTATGCAGTTCTGCTAATCGGATGCGGTGCTGCCACTTACTACACATTCCCATACCCACCCCCGAAGCCATCAGACGAGAGCTCTTCCACTTCAGCAGAAGAGGAACACACCAAATGGAATCGGTCTTAATGCTGAGGGG_-_ATGATTAATTTCGCTCTCATGGATAAAGTTTTGCACGTTGATGAAAAGAACCAAAGGGTAACGGTCCAGGCCGGTGTGAGGGTGTCGCAGCTTGTGGACGAGCTCAAGGATCACGGGCTTACACTGCAGAACTTCGCATCCATTAGGGAGCAGCAGATTGGTGGTATCATTCAGGTTGGGGCTCATGGAACTGGAGCACGTTTACCACCTATTGATGAACAGGTAGTTAGTATGAAGCTGGTTACCCCAGGTAAGGGAACAATAGACATATCTGCTGAAAAGGATCCTGAGGTGTTTTATCTGGCTCGTTGTGGGCTGGGAGGACTTGGAATTGTAGCTGAAATCACTCTCCAATGTGTTCCAAGACATAAACTTGTGGAGCACACATTTGTCTCAAATATTAAAGAAGTGCGGAAAAGGCACAAGAAATGGTTATCACAAAATAAGCATTTAAGATATATGTGGATTCCTTACACAGATGCAGTAGTTGTAGTGCAGTGTAATCCACTTCCCGACGGAAAAGATCCTCCAAAGTTTACCCCTAAATATGGAAGGGATGAAGCTTTGCAGCATGTTCGAGATCTCTACAAAGATCTTCTAAGGGAACACAAGATTGAAGAAGCAAGCACAGGAAAAACCAGTGATGATAAAGCAAGCTCCCAAGTCTGGCCTAGCACTGAGACTGTGACAAATATTAATGAACTTTCTTTTATGGAACTTAGGGACAACCTTCTTTCGTTAGATCCTTTAAATAAAGACCATGTCATCCGAGTAAACTTAGCTGAGGCTGAATACTGGAAAAAGTCTGAAGGATACAGAGTTGGATGGAGTGATGAGATCTTGGGTTTTGATTGTGGTGGACAACAATGGGTTTCTGAGGTTTGTTTACCTGTTGGCACTTTAGCCAAGCCTAACTTGAAAGACCTTGACTACATGGATGAGGTTCTGAAGTTGATAAAAAAGGAAAATATACCAGCACCAGCTCCCATTGAGCAGCGATGGACAGCTTGCAGCAGGAGCCTCATGAGCCCAGCCTCGAGCTCATTACCAGATGCTTTGTTTTCTTGGGTTGGAATCATTATGTACATGCCAACTACAGAGGCCAATCAGAGAAAAGCAATAACAACTGAATTCTTTAGATACAGGCTTGCTGCACAAAGACAGCTATGGAATAACTATTCTGCATATGAACACTGGGCCAAGATTGAGGTTCCAGATAACGAAGAAGAACTTGCTTGGCTGCATGAAAGGCTTCGCAAACGATTTCCAGTGGACTTGTACAATAAGGCTCGTAAAGAGTTGGACCCAAATCAGATTCTTTCAAATGATCTTCTTGAAAAATTGTTTCCCTTGTCGTTGAATAAGTCTGAAGCTTGA___ACAACTCTTTTGGTTTAAGATAGGTTCTTCTGCAACCTCATCCGTGCATTGGATGTAGATATACATTTTCATTTTCACATTAAACATTTTAAAGCTATGTTAATAATTTAAGATCTGTTTCGTTCGCTTTCTACATGGTTCTATTTTTTAGGATATTCAGTGTTCCACAAGGGACACATTTCCGAGCGTCCTGGTCTTGCCCCTTGCATCTTCTGCATCTCTTAAGTTTGGGAGACTAAAGGATGCCTCAGGAACGTTCCTTGCCATCCTCGACTTGCAAGCTACAGCATGGCGATTACCCCCCCTGATCACATGGGGTATGCTTAGGTGTCCCCAATAGGGTCTAATGCTCCTGTCAAAAGAAAACAATATAAATGTAGTGGTTTCGTTTGTTTCACTTGATGTGGGGAAGGCTATGACAACTCATCTTCAACTATGGAATTCCTACTAGGGAACATGTACCAGGAAATCACAG

Fln Alignment:

sp_v1.1_unigene12950___MDKVLHVDEKNQRVTVQAGVRVSQLVDELKDHGLTLQNFASIREQQIGGIIQVGAHGTG--ARLPPIDEQVVSMKLVTP-----GKGTIDISAEKDPEVFYLARCGLGGLGIVAEITLQCVPRHK
D5A9T9_______________LDRVVSVDKRSMRMTLESGVTLKNLIDAAANEGLALPHSPYWLGLTVGGILGTGAHGSSLFGKGSAVHEFVVGMRLVVPASQDEGYAKVVCLTEAEEDLNAL-KVSLGVLGVISQVTLQLQPMFK

SNPs (tot: 81)

Position	A %	C %	G %	T %	Probability
36		66	33		0.997452
42	66			33	0.997452
43	66	33			0.997452
45		33	66		0.997452
501		80	20		0.995493
502			20	80	0.995493
533		80		20	0.995493
647	75		25		0.996473
685		85	14		0.993533
689		14	85		0.993533
690		14	85		0.993533
692			85	14	0.993533
693			14	85	0.993533
694			14	85	0.993533
695		14		85	0.993533
697	85		14		0.993533
700	14			85	0.993533
701		14	85		0.993533
702			85	14	0.993533
788			12	87	0.992554
837	37		62		1.0
906	57			42	1.0
917			80	20	0.995493
918	80			20	0.995493
919	80	20			0.995493
920	80		20		0.995493
924	80			20	0.995493
925			20	80	0.995493
926	20	80			0.995493
927		80	20		0.995493
929		80	20		0.995493
930	20	80			0.995493
931	80	20			0.995493
933	80		20		0.995493
935		25		75	0.996473
936		25		75	0.996473
986			20	80	0.995493
987	80			20	0.995493
989	80		20		0.995493
990	80			20	0.995493
994		20		80	0.995493
998		80	20		0.995493
999			20	80	0.995493
1000	80	20			0.995493
1001	80			20	0.995493
1003			75	25	0.996473
1004		25	75		0.996473
1006	75	25			0.996473
1257	20			80	0.995493
1258	20		80		0.995493
1259		20	80		0.995493
1260	20			80	0.995493
1291	20	80			0.995493
1293	20			80	0.995493
1781	90		10		0.90298
1784	90			10	0.90298
1785		90	10		0.90298
1788	11			88	0.923564
1789		11		88	0.923564
1791		11		88	0.923564
1792	11		88		0.923564
1831	14		85		0.999981
1833	85	14			0.999981
1903		27		72	1.0
1941		33		66	1.0
1950	88	11			0.923564
1952		14	85		0.993533
1954	85			14	0.993533
1955		85	14		0.993533
1958	85	14			0.993533
1961			14	85	0.993533
1962		85	14		0.993533
1964			14	14	0.984337
1966	85			14	0.993533
1967		14	85		0.993533
1968	14	85			0.993533
1969		14	85		0.993533
1972	14	85			0.993533
2055		90		10	0.90298
2057			10	90	0.90298
2059		90	10		0.90298

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain