SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene12949

Length: 226 nt

Origin of reads: Uma

UniGene Fasta

>sp_v1.1_unigene12949
GGGCCAGAACATGAGAGAGTAGTGCAACAGCTTGTAGGAGGTGCAAATAGGTCAAGACAAGAGGAAGCACTTAAGAAAAACAAGCCTTTAATTGTAGTGGGAACTCCTGGGAGGATTTCAGAAATAAGTTTGGCTGGAAAGCTACATACACATGGATGTCGTGTTCTTGTTCTTGATGAGGTTGATGAACTTCTATCATTCAACTTCAGAGAGCACATGCACAGGA

Ace file of the UniGene sp_v1.1_unigene12949

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	dead box ATP-dependent RNA helicase, putative	-	-	3.0e-23	70%
FL-Next	sp=DEAD-box ATP-dependent RNA helicase 47B; Oryza sativa subsp. japonica (Rice).	-	-	0.0	86%
Blast2go	atp-dependent rna helicase	-	-	9.79424e-25	88%

Source	GOs	Term	Type	e value	Identity
Blast2go	auxin biosynthetic process	GO:0009851	Biological Process	9.79424e-25	88%
Blast2go	embryo development ending in seed dormancy	GO:0009793	Biological Process	9.79424e-25	88%
Blast2go	plasmodesmata-mediated intercellular transport	GO:0010497	Biological Process	9.79424e-25	88%
Blast2go	RNA helicase activity	GO:0003724	Molecular Function	9.79424e-25	88%
Blast2go	ATP-dependent helicase activity	GO:0008026	Molecular Function	9.79424e-25	88%
Blast2go	nucleic acid binding	GO:0003676	Molecular Function	9.79424e-25	88%
Blast2go	ATP binding	GO:0005524	Molecular Function	9.79424e-25	88%
Blast2go	plastid	GO:0009536	Cellular Component	9.79424e-25	88%
Blast2go	mitochondrion	GO:0005739	Cellular Component	9.79424e-25	88%

Source	InterPros	Term	Type	e value	Identity
Blast2go	DNA/RNA helicase, DEAD/DEAH box type, N-terminal	IPR011545	-	9.79424e-25	88%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q10PV9

Fln msg: Distance to subject end: 264 aas, your sequence is shorter than subject: 75 - 573

Fln protein: GPEHERVVQQLVGGANRSRQEEALKKNKPLIVVGTPGRISEISLAGKLHTHGCRVLVLDEVDELLSFNFREHMHR

Protein Length: 76

Fln nts: GGGCCAGAACATGAGAGAGTAGTGCAACAGCTTGTAGGAGGTGCAAATAGGTCAAGACAAGAGGAAGCACTTAAGAAAAACAAGCCTTTAATTGTAGTGGGAACTCCTGGGAGGATTTCAGAAATAAGTTTGGCTGGAAAGCTACATACACATGGATGTCGTGTTCTTGTTCTTGATGAGGTTGATGAACTTCTATCATTCAACTTCAGAGAGCACATGCACAGGA

Fln Alignment:

sp_v1.1_unigene12949___GPEHERVVQQLVGGANRSRQEEALKKNKPLIVVGTPGRISEISLAGKLHTHGCRXXXXXXXXXXXSFNFREHMHR
Q10PV9_______________GPNDKRLVQQLVGGANRSRQEEALKKNKPLIVVGTPGRISEISAGGKLHTHGCRFLVLDEVDQLLSFNYREDMHR

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
58		66		33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain