SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene12941

Length: 232 nt

Origin of reads: Uma

UniGene Fasta

>sp_v1.1_unigene12941
GAAAAGGGATGTACCTCCAGTTTATCAAAGCAGAGGTAACTACTCCCTCGGGACTGAAGGCGAGGCCAGTGCTGACAAGCTACTACAAGAGTACCAACTTTAGGAATCGACCATTTGATAAGTTTAAATGTGAATACGAGCCCGGACGAGACAATCCTTTGTCCCGACAGCAGACAAAGTATGTTTTGCCAACTACTGTGTGGATTTATTACAAAGGGACGAAGTACTGAGA

Ace file of the UniGene sp_v1.1_unigene12941

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Indole-3-acetic acid-amido synthetase GH3.17, putative n=1 Tax=Ricinus communis RepID=B9RG18_RICCO	-	-	1.0e-22	70%
FL-Next	tr=Auxin-induced GH3 protein; Pinus pinaster (Maritime pine).	-	-	0.0	57%
Blast2go	gh3 family protein	-	-	2.01237e-22	78%

Source	GOs	Term	Type	e value	Identity
Blast2go	auxin homeostasis	GO:0010252	Biological Process	2.01237e-22	78%
Blast2go	response to auxin stimulus	GO:0009733	Biological Process	2.01237e-22	78%
Blast2go	indole-3-acetic acid amido synthetase activity	GO:0010279	Molecular Function	2.01237e-22	78%
Blast2go	cytoplasm	GO:0005737	Cellular Component	2.01237e-22	78%
Blast2go	nucleus	GO:0005634	Cellular Component	2.01237e-22	78%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: Q4LAM0

Fln msg: Overlapping hits, possible frame ERROR between 143 and 127, Distance to subject end: 384 aas, your sequence is shorter than subject: 77 - 615

Fln protein: KGMYLQFIKAEVTTPSGLKARPVLTSYYKSTNFRNRPFDKFxxxxxxxDETILCPDSRQSMFCQLLCGFITKGRSTE

Protein Length: 78

Fln nts: GAAAAGGGATGTACCTCCAGTTTATCAAAGCAGAGGTAACTACTCCCTCGGGACTGAAGGCGAGGCCAGTGCTGACAAGCTACTACAAGAGTACCAACTTTAGGAATCGACCATTTGATAAGTTTxxxxxxxxxxxxxxxxxxxxxGACGAGACAATCCTTTGTCCCGACAGCAGACAAAGTATGTTTTGCCAACTACTGTGTGGATTTATTACAAAGGGACGAAGTACTGAGA

Fln Alignment:

sp_v1.1_unigene12941___KGMYLQFIKAEVTTPSGLKARPVLTSYYKSTNFRNRPFDKFxxxxxxDETILCPDSRQSMFCQLLCG
Q4LAM0_______________KGMYFLFVKSETRTPGGLLARPVLTSYYKSQDFIERPYDPYxxxxxxMEAILCSDSYQSMYCQLLCG

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain