SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene12874

Length: 2909 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene12874
ATGGGGACCGAAAGGACGGACCGAATCTGGGGGGATTTATGTATGTCAGTCGCATCTCCCGGTCAGAGAGAGACACCTTGGAAGCCCCAATCAACCATACGATGAAACACGATTTCATACGAAATCGATCAGAAGAAACTGACTGCACAGGACACTGAGGTGTATGTGCGCATAATATGGCAACCACATTCATTTCCCCAGCTGCGGTAACTCTCCATGGTGAGATGAGATGAAAAGAGGGATAATCAGTGGAACTCTCCACAGTCTCCGCCCAGAATGGCACACCTCGTTAATACTAATAATAATAAGAATAATGATTTTGGGGATTCAGATTCACAGGTGGAGATGGCGAAGGAGGAGTCTCAGCCTCAGCCTTGCACAATTGTATGGTTCAGAAGGGATCTTCGAGTGGAAGATAACCCTGCCCTGGCAAACGCAGCAAGGCGGGGTGGCACTGTAATCCCTGTTTACATTTGGTGTCCCAAAGAAGAAGGCGAGTTCTACCCTGGTCGAGTTTCTAGGTGGTGGCTAAAGCAATCTCTCATTCATCTCCATCACTCTCTTCAGGCACTTGGTTCCCCTCTAGTAATGATTAAAGCGCAAGAAAGCACTCTTTCTGCCCTTTTGGGCTGCTGCAGATCCACTGGCGCTACTCGGATCTTTTACAATCACCTCTACGATCCTGTATCACTTGTTCGAGATCATAACCTCAAGCAGCAGCTTCTGGAACTAGGATTATGTGTGCAGAGCTTCAATGGAGATTTACTATATGAACCTTGGGAAATATATGATGACAAAGGACAGGCTTTTACCACCTTTGATCCATACTGGAGAAGGTGCCTAAAAATGCCTTTTGAGCCTGAGGCACCACTTCTTCCTCCCCGGCGATTGATGCCACCAGCAAGTGTAGTTTTGGGTTGTACGGCAGAAGAATTATCCCTTGAACATGAAACTGAAAAATCAAGCAATGCCTTGCTAAGCAGAGGATGGTCTCCTGGTTGGAGCAATGCAGATAAAGCATTGGATGAATTTTTGGCAGGACCTCTACTGGATTATGCAAAGAATAGGCAGAAGGCTGATGGTTCCACCACTTCCCTTCTGTCACCTCACTTGCACTTTGGAGAATTGAGTGTAAGAAAAGTGTTCCATTGTGTGCGAAGGAAACAAATCCTTTGGGTGAAAGAAGGAAAAACAGATGGTGAAGAAAGTGTAGATTTCTTCCTTAGAGCAATTGGGCTTAGGGAATATTCACGATATCTTTGTTTCAATTTTCCTTTCACACATGAACGGTCATTGCTACAGAATTTGAGATTTTTCCCATGGAGGCGGGATGAAGGTTATTTTAAAGCTTGGAGGCAAGGTCGAACTGGTTATCCATTAGTAGATGCAGGAATGAGGGAACTTTGGGCAACAGGATGGATACACAATCGAATTCGAGTCATTGTCTCTAGCTTTTGTGTAAAGTTTCTTCAACTTCCATGGACTTGGGGAATGAAATATTTCTGGGATACACTGTTGGATGCAGACATAGAAGCTGATGTTCTTGGCTGGCAGTATATCTCTGGTAGCTTACCTGATGGCCATGAATTGGACCGGATGGATTTCCCTCAGGTCCAAGGTTACAAGTTTGATCCTGATGGTGAATATGTACGTCAATGGTTACCTGAGCTAGCAAGAATGCCCACAGAATGGATTCATCACCCCTGGAATGCTCCTGTAGCCATACTCAGGGCAGCAGGGGTTGAGTTAGGATCAAATTATCCAAGGCCAATTGTAGAGATGAGTGCTGCTCAAGAACGTCTGCAAAATGCACTTACACAATTGTGGGAATTGGATGCCAGTGCAATGACGGCAGTGGCTAATGGTACAGAAGAAGGTTTAGGGGATACTTTGGAAGTTAGAGGCACAGGAGGTCCATTACATGAAAGGATGTATGTTCCTAGAGTAGTTATAAAGAGGGAGGAAGCATCTTCAGCTAGTTCATGGCAAGATCAAAGAGTACCCAACATTGCTAGGCAGGAACGTTCTTCTCCAAGCAATAGATGGAGAAGCAAAACACAAATATATCATAAAGAATCACAACAGATTTCTGTTGCAGCCATGGAATCTGAAACAGATGTGCATAGTGGTAGTATGTCACACAAATCTCAGGAGCATATACACTTGAATGATCTAGCAAATATTCCAAGTGCAGACAGTGACATACAGTCTACAGCAGAATCCTCCTCTGTTAGAAAAAGGAGCAGTAGTGACAGTCAATCTGATTTTGTACCTCCATCATATCAATCATTGACTGCTAATGCATTGCAAATAGCAGAACAGGTTGGGCCTGCATCCCTTAATGATTTCAGCGGAAATTCTTCTAAGCAAGTATTCAATCTAAATTCCTTGGTGGATAAGTTTGAAGAAGAGGATGTTATGTCAAATAAGACACATGGAGCCAGAACAGCAAAAAGGCATTGCCATGATGAAGCATTGAAAGGAAAGACATGATATGATATATCCTCCGAAGTTTGAACAATGACATTTTAAATAATAATCCTGCATGTGAATGATGTAGCAAATCACAATGTTGTGTTGCAAAAACACTTAGCCTATTTTACTTCTTCTAGAAAGTGTTCATCAATATAGGTTACTCTTTGCTGTTTAAGACATTTTTTGTAACTTCGGAAATAGACATTTAGGTATCACTTTAATCAAATGTTAGTCTTCGTTTATAGTACCTATATGTTGAAAAGCAAATATGGAGGGAGTAATGGAGTCTGTAAAGCTCTTAAATGTACATTCAGTATTTGTGAGCTGCAATGAAATTGCTTTTAACATTTTCCACACTCTTTGTGTCTTGCTTTAAGTGAGTTGATCAGTGTACCATGAGAGAATTGGAATAAAGTGAACTTATTTACTAAAAT

Ace file of the UniGene sp_v1.1_unigene12874

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Cryptochrome 1a n=3 Tax=Physcomitrella patens RepID=E1C9X9_PHYPA	-	-	66%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	65%
Blast2go	blue-light photoreceptor	-	-	77%

Source	GOs	Term	Type	Identity
Blast2go	DNA repair	GO:0006281	Biological Process	77%
Blast2go	receptor activity	GO:0004872	Molecular Function	77%
Blast2go	DNA photolyase activity	GO:0003913	Molecular Function	77%

Source	InterPros	Term	Type	Identity
Blast2go	Cryptochrome/DNA photolyase, class 1	IPR002081	-	77%
Blast2go	DNA photolyase, FAD-binding/Cryptochrome, C-terminal	IPR005101	-	77%
Blast2go	DNA photolyase, N-terminal	IPR006050	-	77%
Blast2go	Cryptochrome, plant	IPR014134	-	77%
Blast2go	Rossmann-like alpha/beta/alpha sandwich fold	IPR014729	-	77%
Blast2go	Cryptochrome/DNA photolyase, class 1 conserved site, C-terminal	IPR018394	-	77%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LPX1

Fln msg: your sequence is longer than subject: 739 - 655

Fln protein: MAHLVNTNNNKNNDFGDSDSQVEMAKEESQPQPCTIVWFRRDLRVEDNPALANAARRGGTVIPVYIWCPKEEGEFYPGRVSRWWLKQSLIHLHHSLQALGSPLVMIKAQESTLSALLGCCRSTGATRIFYNHLYDPVSLVRDHNLKQQLLELGLCVQSFNGDLLYEPWEIYDDKGQAFTTFDPYWRRCLKMPFEPEAPLLPPRRLMPPASVVLGCTAEELSLEHETEKSSNALLSRGWSPGWSNADKALDEFLAGPLLDYAKNRQKADGSTTSLLSPHLHFGELSVRKVFHCVRRKQILWVKEGKTDGEESVDFFLRAIGLREYSRYLCFNFPFTHERSLLQNLRFFPWRRDEGYFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFCVKFLQLPWTWGMKYFWDTLLDADIEADVLGWQYISGSLPDGHELDRMDFPQVQGYKFDPDGEYVRQWLPELARMPTEWIHHPWNAPVAILRAAGVELGSNYPRPIVEMSAAQERLQNALTQLWELDASAMTAVANGTEEGLGDTLEVRGTGGPLHERMYVPRVVIKREEASSASSWQDQRVPNIARQERSSPSNRWRSKTQIYHKESQQISVAAMESETDVHSGSMSHKSQEHIHLNDLANIPSADSDIQSTAESSSVRKRSSSDSQSDFVPPSYQSLTANALQIAEQVGPASLNDFSGNSSKQVFNLNSLVDKFEEEDVMSNKTHGARTAKRHCHDEALKGKT*

Protein Length: 740

Fln nts: ATGGGGACCGAAAGGACGGACCGAATCTGGGGGGATTTATGTATGTCAGTCGCATCTCCCGGTCAGAGAGAGACACCTTGGAAGCCCCAATCAACCATACGATGAAACACGATTTCATACGAAATCGATCAGAAGAAACTGACTGCACAGGACACTGAGGTGTATGTGCGCATAATATGGCAACCACATTCATTTCCCCAGCTGCGGTAACTCTCCATGGTGAGATGAGATGAAAAGAGGGATAATCAGTGGAACTCTCCACAGTCTCCGCCCAGA_-_ATGGCACACCTCGTTAATACTAATAATAATAAGAATAATGATTTTGGGGATTCAGATTCACAGGTGGAGATGGCGAAGGAGGAGTCTCAGCCTCAGCCTTGCACAATTGTATGGTTCAGAAGGGATCTTCGAGTGGAAGATAACCCTGCCCTGGCAAACGCAGCAAGGCGGGGTGGCACTGTAATCCCTGTTTACATTTGGTGTCCCAAAGAAGAAGGCGAGTTCTACCCTGGTCGAGTTTCTAGGTGGTGGCTAAAGCAATCTCTCATTCATCTCCATCACTCTCTTCAGGCACTTGGTTCCCCTCTAGTAATGATTAAAGCGCAAGAAAGCACTCTTTCTGCCCTTTTGGGCTGCTGCAGATCCACTGGCGCTACTCGGATCTTTTACAATCACCTCTACGATCCTGTATCACTTGTTCGAGATCATAACCTCAAGCAGCAGCTTCTGGAACTAGGATTATGTGTGCAGAGCTTCAATGGAGATTTACTATATGAACCTTGGGAAATATATGATGACAAAGGACAGGCTTTTACCACCTTTGATCCATACTGGAGAAGGTGCCTAAAAATGCCTTTTGAGCCTGAGGCACCACTTCTTCCTCCCCGGCGATTGATGCCACCAGCAAGTGTAGTTTTGGGTTGTACGGCAGAAGAATTATCCCTTGAACATGAAACTGAAAAATCAAGCAATGCCTTGCTAAGCAGAGGATGGTCTCCTGGTTGGAGCAATGCAGATAAAGCATTGGATGAATTTTTGGCAGGACCTCTACTGGATTATGCAAAGAATAGGCAGAAGGCTGATGGTTCCACCACTTCCCTTCTGTCACCTCACTTGCACTTTGGAGAATTGAGTGTAAGAAAAGTGTTCCATTGTGTGCGAAGGAAACAAATCCTTTGGGTGAAAGAAGGAAAAACAGATGGTGAAGAAAGTGTAGATTTCTTCCTTAGAGCAATTGGGCTTAGGGAATATTCACGATATCTTTGTTTCAATTTTCCTTTCACACATGAACGGTCATTGCTACAGAATTTGAGATTTTTCCCATGGAGGCGGGATGAAGGTTATTTTAAAGCTTGGAGGCAAGGTCGAACTGGTTATCCATTAGTAGATGCAGGAATGAGGGAACTTTGGGCAACAGGATGGATACACAATCGAATTCGAGTCATTGTCTCTAGCTTTTGTGTAAAGTTTCTTCAACTTCCATGGACTTGGGGAATGAAATATTTCTGGGATACACTGTTGGATGCAGACATAGAAGCTGATGTTCTTGGCTGGCAGTATATCTCTGGTAGCTTACCTGATGGCCATGAATTGGACCGGATGGATTTCCCTCAGGTCCAAGGTTACAAGTTTGATCCTGATGGTGAATATGTACGTCAATGGTTACCTGAGCTAGCAAGAATGCCCACAGAATGGATTCATCACCCCTGGAATGCTCCTGTAGCCATACTCAGGGCAGCAGGGGTTGAGTTAGGATCAAATTATCCAAGGCCAATTGTAGAGATGAGTGCTGCTCAAGAACGTCTGCAAAATGCACTTACACAATTGTGGGAATTGGATGCCAGTGCAATGACGGCAGTGGCTAATGGTACAGAAGAAGGTTTAGGGGATACTTTGGAAGTTAGAGGCACAGGAGGTCCATTACATGAAAGGATGTATGTTCCTAGAGTAGTTATAAAGAGGGAGGAAGCATCTTCAGCTAGTTCATGGCAAGATCAAAGAGTACCCAACATTGCTAGGCAGGAACGTTCTTCTCCAAGCAATAGATGGAGAAGCAAAACACAAATATATCATAAAGAATCACAACAGATTTCTGTTGCAGCCATGGAATCTGAAACAGATGTGCATAGTGGTAGTATGTCACACAAATCTCAGGAGCATATACACTTGAATGATCTAGCAAATATTCCAAGTGCAGACAGTGACATACAGTCTACAGCAGAATCCTCCTCTGTTAGAAAAAGGAGCAGTAGTGACAGTCAATCTGATTTTGTACCTCCATCATATCAATCATTGACTGCTAATGCATTGCAAATAGCAGAACAGGTTGGGCCTGCATCCCTTAATGATTTCAGCGGAAATTCTTCTAAGCAAGTATTCAATCTAAATTCCTTGGTGGATAAGTTTGAAGAAGAGGATGTTATGTCAAATAAGACACATGGAGCCAGAACAGCAAAAAGGCATTGCCATGATGAAGCATTGAAAGGAAAGACATGA___TATGATATATCCTCCGAAGTTTGAACAATGACATTTTAAATAATAATCCTGCATGTGAATGATGTAGCAAATCACAATGTTGTGTTGCAAAAACACTTAGCCTATTTTACTTCTTCTAGAAAGTGTTCATCAATATAGGTTACTCTTTGCTGTTTAAGACATTTTTTGTAACTTCGGAAATAGACATTTAGGTATCACTTTAATCAAATGTTAGTCTTCGTTTATAGTACCTATATGTTGAAAAGCAAATATGGAGGGAGTAATGGAGTCTGTAAAGCTCTTAAATGTACATTCAGTATTTGTGAGCTGCAATGAAATTGCTTTTAACATTTTCCACACTCTTTGTGTCTTGCTTTAAGTGAGTTGATCAGTGTACCATGAGAGAATTGGAATAAAGTGAACTTATTTACTAAAAT

Fln Alignment:

sp_v1.1_unigene12874___CTIVWFRRDLRVEDNPALANAARRGGTVIPVYIWCPKEEGEFYPGRVSRWWLKQSLIHLHHSLQALGSPLVMIKAQESTLSALLGCCRSTGATRIFYNHLYDPVSLVRDHNLKQQLLELGLCVQSFNGDLLYEPWEIYDDKGQAFTTFDPYWRRCLKXXXXXXXXXXXXXXXXXXXSVVLGCTAEELSLEHETEKSSNALLSRGWSPGWSNADKALDEFLAGPLLDYAKNRQKADGSTTSLLSPHLHFGELSVRKVFHCVRRKQILWVKEGKTDGEESVDFFLRAIGLREYSRYLCFNFPFTHERSLLQNLRFFPWRRDEGYFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFCVKFLQLPWTWGMKYFWDTLLDADIEADVLGWQYISGSLPDGHELDRMDFPQVQGYKFDPDGEYVRQWLPELARMPTEWIHHPWNAPVAILRAAGVELGSNYPRPIVEMSAAQERLQNALTQLWELDASAMTAVANGTEEGLGDTLEVRGTGGPLHERMYVPRVVIKREEASSASSWQDQRVPNIA
B8LPX1_______________CSIVWFRRDLRVEDNPALA-AGVRAGAVIVLYIWSPEEEGQYYPGRVSRWWLKQSLAHLDSSLRNLGARLIT-KRSTNSISAILQVVQATGATQLFYNHLYDPLSLVRDHKLKQDLSSRGILVRSFNSDLLYEPWEVNDEEGHAFSTFQDYWNKCLNMPYDPLAPLLPPKRIVAGE--VSNCPSDDLNLEDESEKASNALLARAWSPGWSSADKALTAFINGPLLDYAINRQKADSATTSLLSPHLHFGELSVKKVFHLLRIRQVLWANEGNTSGEQSVNLFLKSIGLREYSRYLSFNFPSSHEKPLLSHLNYFPWRVDSDYFKSWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLECDALGWQYISGCLPDGREMDRIDNPQFEGYKFDPAGEYVRRWLPELARLPTEWIHHPWDAPRAVLQAAGVELGSNYPLPIVEISTAKERLQEGLSEMWQREADARASLENGTEEGLGESLE--NANASLPDQMDVDREPVRNNTDLAARSQDDQLVPSIS

SNPs (tot: 16)

Position	A %	C %	G %	T %	Probability
238	75		25		0.996473
239	50		25	25	0.995533
241	50		50		1.0
406		80	20		0.995493
420		80		20	0.995493
624		22		77	0.999999
907	33		66		0.997452
912	66		33		0.997452
1444	50		50		1.0
1487		90		10	0.90298
1489			10	90	0.90298
2431	90		10		0.90298
2432	90		10		0.90298
2605	83		16		0.994512
2619			83	16	0.994512
2640		50		50	1.0

SSRs (tot: 1)

Start position	End position	Sequence	Length
297	308	TAA TAA TAA TAA	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain