SustainPineDB

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Assembly info
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SSRs
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ECs
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene12871

Length: 288 nt

Origin of reads: Uma

UniGene Fasta

>sp_v1.1_unigene12871
AGGTGCTGAAATCGCAGAAAGGCAATAAGATGTGTTTCGATTGTCAAGCTCGGAATCCAACATGGTCCAGCGTCACATTCGGGGTGTACATATGCTTAGACTGCTCCAGTGTTCACCGAAACATGGGCGTGCACATCAGTTTTGTTAGGTCAACAAACCTAGACAGTTGGCAGCTTGCACAGCTACGTACGATGAAAGTAGGGGGAAATGCCTCTGCAAATGAGTTCTTTACGAAGCATGGCGGGTCCTCACTTCTAAACGACTCTGACACAAAGAAGAAATATTCTG

Ace file of the UniGene sp_v1.1_unigene12871

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ARF GTPase activator; K12493 ADP-ribosylation factor GTPase-activating protein 2/3	-	-	8.00141e-43	86%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	62%
Blast2go	arf gtpase activator	-	-	8.40779e-45	84%

Source	GOs	Term	Type	e value	Identity
Blast2go	regulation of ARF GTPase activity	GO:0032312	Biological Process	8.40779e-45	84%
Blast2go	ARF GTPase activator activity	GO:0008060	Molecular Function	8.40779e-45	84%
Blast2go	zinc ion binding	GO:0008270	Molecular Function	8.40779e-45	84%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Arf GTPase activating protein	IPR001164	-	8.40779e-45	84%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5A9S4

Fln msg: Distance to subject end: 297 aas, atg_distance in limit (1-15): atg_distance = 15, your sequence is shorter than subject: 86 - 406

Fln protein: MCFDCQARNPTWSSVTFGVYICLDCSSVHRNMGVHISFVRSTNLDSWQLAQLRTMKVGGNASANEFFTKHGGSSLLNDSDTKKKYS

Protein Length: 87

Fln nts: AGGTGCTGAAATCGCAGAAAGGCAATAAG_-_ATGTGTTTCGATTGTCAAGCTCGGAATCCAACATGGTCCAGCGTCACATTCGGGGTGTACATATGCTTAGACTGCTCCAGTGTTCACCGAAACATGGGCGTGCACATCAGTTTTGTTAGGTCAACAAACCTAGACAGTTGGCAGCTTGCACAGCTACGTACGATGAAAGTAGGGGGAAATGCCTCTGCAAATGAGTTCTTTACGAAGCATGGCGGGTCCTCACTTCTAAACGACTCTGACACAAAGAAGAAATATTCTG

Fln Alignment:

sp_v1.1_unigene12871___LKSQKGNKMCFDCQARNPTWSSVTFGVYICLDCSSVHRNMGVHISFVRSTNLDSWQLAQLRTMKVGGNASANEFFTKHG
D5A9S4_______________LRAKPENKMCFDCSTRNPTWASVTYGIFICLDCSASHRSLGVHISFVRSVNLDSWTPEQLKVMSFGGNGRGHTFFKQHG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain