SustainPineDB

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Assembly info
Unigenes
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SSRs
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ECs
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene12861

Length: 250 nt

Origin of reads: Uma

UniGene Fasta

>sp_v1.1_unigene12861
ACACATCCCAATCCTAACCAGCACCTCCGGCCTAACATGTTCCTCTCTCTCCCCAGCCCTCCAACACCCCTCTCGCCTAGCAGTCGGCCACCCCTTCAACCCACCCCACCTAATCCCCCTCGTCGAAGTCGTCGGCTCACCTCAAACATCCCCTGAGACCATCGCGACTGCAATGGCCTTCTACACCTCCCTCGGCAAGAAACCAATCCACCTCCAGAAGGAAATCCCAGGCCATGTAGCGAATCGACTT

Ace file of the UniGene sp_v1.1_unigene12861

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	3-hydroxyacyl-CoA dehydrogenase protein n=1 Tax=Herbaspirillum seropedicae SmR1 RepID=D8IWV8_HERSS	-	-	3.0e-21	66%
FL-Next	tr=Putative uncharacterized protein; Oryza sativa subsp. indica (Rice).	-	-	0.0	40%
Blast2go	3-hydroxyacyl- dehydrogenase	-	-	4.8948e-21	79%

Source	GOs	Term	Type	e value	Identity
Blast2go	fatty acid metabolic process	GO:0006631	Biological Process	4.8948e-21	79%
Blast2go	oxidoreductase activity	GO:0016491	Molecular Function	4.8948e-21	79%
Blast2go	binding	GO:0005488	Molecular Function	4.8948e-21	79%

Source	InterPros	Term	Type	e value	Identity
Blast2go	3-hydroxyacyl-CoA dehydrogenase, NAD binding	IPR006176	-	4.8948e-21	79%
Blast2go	NAD(P)-binding domain	IPR016040	-	4.8948e-21	79%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: B8AAA5

Fln msg: Distance to subject end: 1124 aas, your sequence is shorter than subject: 83 - 1601

Fln protein: HIPILTSTSGLTCSSLSPALQHPSRLAVGHPFNPPHLIPLVEVVGSPQTSPETIATAMAFYTSLGKKPIHLQKEIPGHVANRL

Protein Length: 84

Fln nts: ACACATCCCAATCCTAACCAGCACCTCCGGCCTAACATGTTCCTCTCTCTCCCCAGCCCTCCAACACCCCTCTCGCCTAGCAGTCGGCCACCCCTTCAACCCACCCCACCTAATCCCCCTCGTCGAAGTCGTCGGCTCACCTCAAACATCCCCTGAGACCATCGCGACTGCAATGGCCTTCTACACCTCCCTCGGCAAGAAACCAATCCACCTCCAGAAGGAAATCCCAGGCCATGTAGCGAATCGACTT

Fln Alignment:

sp_v1.1_unigene12861___LQHPSRLAVGHPFNPPHLIPLVEVVGSPQTSPETIATAMAFYTSLGKKPIHLQKEIPGHVANRL
B8AAA5_______________MTHPQRLLIAHFWHPPHLIPLVEIVPGSATEPRHLAAVQALLGEMALEAVLLERAAPGFVGNRL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain