SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene12857

Length: 160 nt

Origin of reads: Uma

UniGene Fasta

>sp_v1.1_unigene12857
GCAAACTAACCGCAATGGCAAGGAAAGACAGAGTTGGCGCCTCTGGCAAGAAATTCCGTATGACTCTCGGTCTCCCTGTCGGTGCCGTCCTCAACTGTGCCGACAACAGTGGTGCCAAGTCACTATTTATCATCGAGCCTTACGGATTCGGAGCACGATT

Ace file of the UniGene sp_v1.1_unigene12857

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ribosomal protein L17; K02894 large subunit ribosomal protein L23e	-	-	2.0e-11	76%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	56%
Blast2go	60s ribosomal protein l17 l23	-	-	7.72926e-14	93%

Source	ECs	Term	Type	e value	Identity
Blast2go	Protein-synthesizing GTPase.	EC:3.6.5.3	-	7.72926e-14	93%

Source	GOs	Term	Type	e value	Identity
Blast2go	translation	GO:0006412	Biological Process	7.72926e-14	93%
Blast2go	structural constituent of ribosome	GO:0003735	Molecular Function	7.72926e-14	93%
Blast2go	ribosome	GO:0005840	Cellular Component	7.72926e-14	93%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NS49

Fln msg: Distance to subject end: 91 aas, your sequence is shorter than subject: 48 - 140

Fln protein: MARKDRVGASGKKFRMTLGLPVGAVLNCADNSGAKSLFIIEPYGFGAR

Protein Length: 49

Fln nts: GCAAACTAACCGCA_-_ATGGCAAGGAAAGACAGAGTTGGCGCCTCTGGCAAGAAATTCCGTATGACTCTCGGTCTCCCTGTCGGTGCCGTCCTCAACTGTGCCGACAACAGTGGTGCCAAGTCACTATTTATCATCGAGCCTTACGGATTCGGAGCACGATT

Fln Alignment:

sp_v1.1_unigene12857___MARKDRVGASGKKFRMTLGLPVGAVLNCADNSGAKSLFIIEPYGFGAR
A9NS49_______________MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGR

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
22	25		75		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain