SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene12812

Length: 2285 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene12812
GTCGTGTGGAGATGGGGGATCTGTAGAGTGAAAGAAAATGAATTTATGTGAAGGATTGGACCCTGTTTCCATGGCGATTAGTCAAATCCAAAGCGTGCAGCACTTCTTCCTTGACAAAATCATTCAATTCCTGCCATTAGGGGCCTCAATTTTCGCTTAGATCTCGTCCAGCGACCGAAGCACAAACACATTGAATCATATTATGTGAAACTTGGAATGATGGATCCGTGGGCAGAACGCCGCAGCAAACAGCAACAATAATAATCAGAATGGCGGCATCCAACGCACAATCCACAGCTGTGAAGTCCTATTTTAAAGCTCCAGAGGGTCGCTACAAGCTTTCTTACGAAAAGACTCATCCCGCGGGCCTTCTTCATTACAGCCATGGCAAAGCCGTTACACAGGTAACACTTGCTCAATTGAAGGATAAGCCGGTTGCCCCCCCTCCGGCTTCTTCAAGCTTTGGCAGTACCAGTAGCGTTAGGAATGCAGCTGCTAGACTTTTAGGAGGGGTCAATGGAACTCGGATGCTAGGGTTTGGTGGGAGCAATGGGACCAGCAAACCTAGTACAGGAAATAAAGTCCCAGCCTCTCCAGCTGCTGCTGCCGTTACGGCACATAGTCCCACTGTTGCAAGCCATTCACCTTCTGTTGTTTCGAGCTATGACGGAGAAGGGACTTACATCATTTTCAATGTTGGAGACACCCTTTTTATCAGTGATTATAATTCTCGTGATAAGGATCCTATCAAAGCAATTCATTTCAGTAGTTCCAGTCCAATTTGCCATGCCTTTGATTCAGATGCAAAGGATGATCATGACCTTTTGATTGGCCTGAACTCTGGAGATGTATATTCAGTGTCATTGAGGCAGCAGTTACAGGATCCTGGAAAGAAGCTTGTAGGGGCCCACCACTACAATAAAGATGGCTCCTTGAACAGCAGCCGTTGTACCGCTATTGCCTGGGTGCCTGGAGGAGATGGCTTTTTCCTGGCTGCACATGCAGATGGTAATTTATATTTTTATCACAAGAATAAAGATGGAACTATTGATGCAACTTTACCAATAATAAAGGATCAGACCCAATTTTCCGTGACACATGCAAAGTCTAGTAAGAGCAACCCTATTGCAAGGTGGCATGTCTGCCAATGTCCCATCAACAGTATTTCTTTCTCTGCTGATGGCCAGTTTTTGGCAACTGTTGGAAGGGATGGTCATTTAAGAATATTTGATTTTGGAAAGGAGCAATTGATTTGTGGTGGTAAAAGCTATTATGGTGCTCTACTATGTTGTGCTTGGAGTCCTGATGGGAAGTATGTCTTGGCTGGAGGAGAAGATGACCTAGTACAGGTGTGGAGTATGGAAGACCGTGCTGTGGTGGCTTGGGGTGAGGGTCACAACTCTTGGGTCAGTGCTGTTGTATTTGATTCATGCTGGACCCTACCTTGTTCTGATGGCGCAGAAGAAAGCACCATGTACCGGTTTGGATCAGTTGGGCAGGATACTCAATTACTTCTATGGGATTTGGTGATGGATGAAATTGTAGTGCCTGTGCGAAGGTGTGCTCCAGGTGGCTCTCCTACATACAGTACGAGCAGCCAATCTTCCTGCATGGAGAATGTTAATTCTGTTGGTCTTCTTCAATCTGCTCCAAGTAGGAGAGATGTTCCAAAACTCTCCCCTGTAGTGGCTCACAGAGTACATGCAGAACCTCTTTCTGGCCTTATTTTTGCAAAGGATTCGATTATCACATGTAGTCATGAGGGACATTTGAAGATCTGGACTAGACCTTGCCGTACAAACAGCCCTGCAGGCAATTCAGTTGTCCCACTCGAATCTTTGAATAATAATGAGTGAAGTAGCAAAGCTGAGATTTAAACATAAGAGGAATTATCGACAATGTTGTTGTCCAGCTCAAAGATGAAAATGTTCATTACAAGCGTGTACTGCGAAAATCTTATGGCAAAATCAGTTTGCAAGTGTATTGTCTTAAAGAAATGACATCTGTGAAATGGTGGTTATTAGTGCCTTTGCTTCTGATGTATGAAGGCCTAATTACCGTGTTTTAACATTGGCCATCATACTGGTAGCATCCTTGTATGCGCTAAATAGGATAACACTGCCAGCATTGTTGGGGCTTTTGTATTTGGAGGGTGATTTATTTGTGTTGAGTTAGTTTTTATTTGATTTTGTGGAAGCGTGTATATAAAGAAGTTTGAACTTCACAAACAACGTCGATACATTATTTTGATGTATTAGCCAATGCAATATGTACATTAAAAAGTT

Ace file of the UniGene sp_v1.1_unigene12812 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	similar to transducin family protein / WD-40 repeat family protein	-	-	63%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	96%
Blast2go	transducin family protein wd-40 repeat family protein	-	-	75%

Source	GOs	Term	Type	e value	Identity
Blast2go	nucleotide binding	GO:0000166	Molecular Function	0.0	75%

Source	InterPros	Term	Type	Identity
Blast2go	WD40 repeat	IPR001680	-	75%
Blast2go	WD40 repeat-like-containing domain	IPR011046	-	75%
Blast2go	WD40/YVTN repeat-like-containing domain	IPR015943	-	75%
Blast2go	WD40-repeat-containing domain	IPR017986	-	75%
Blast2go	WD40 repeat, subgroup	IPR019781	-	75%
Blast2go	WD40 repeat 2	IPR019782	-	75%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LLB6

Fln msg: your sequence is longer than subject: 529 - 185

Fln protein: MAASNAQSTAVKSYFKAPEGRYKLSYEKTHPAGLLHYSHGKAVTQVTLAQLKDKPVAPPPASSSFGSTSSVRNAAARLLGGVNGTRMLGFGGSNGTSKPSTGNKVPASPAAAAVTAHSPTVASHSPSVVSSYDGEGTYIIFNVGDTLFISDYNSRDKDPIKAIHFSSSSPICHAFDSDAKDDHDLLIGLNSGDVYSVSLRQQLQDPGKKLVGAHHYNKDGSLNSSRCTAIAWVPGGDGFFLAAHADGNLYFYHKNKDGTIDATLPIIKDQTQFSVTHAKSSKSNPIARWHVCQCPINSISFSADGQFLATVGRDGHLRIFDFGKEQLICGGKSYYGALLCCAWSPDGKYVLAGGEDDLVQVWSMEDRAVVAWGEGHNSWVSAVVFDSCWTLPCSDGAEESTMYRFGSVGQDTQLLLWDLVMDEIVVPVRRCAPGGSPTYSTSSQSSCMENVNSVGLLQSAPSRRDVPKLSPVVAHRVHAEPLSGLIFAKDSIITCSHEGHLKIWTRPCRTNSPAGNSVVPLESLNNNE*

Protein Length: 530

Fln nts: GTCGTGTGGAGATGGGGGATCTGTAGAGTGAAAGAAAATGAATTTATGTGAAGGATTGGACCCTGTTTCCATGGCGATTAGTCAAATCCAAAGCGTGCAGCACTTCTTCCTTGACAAAATCATTCAATTCCTGCCATTAGGGGCCTCAATTTTCGCTTAGATCTCGTCCAGCGACCGAAGCACAAACACATTGAATCATATTATGTGAAACTTGGAATGATGGATCCGTGGGCAGAACGCCGCAGCAAACAGCAACAATAATAATCAGA_-_ATGGCGGCATCCAACGCACAATCCACAGCTGTGAAGTCCTATTTTAAAGCTCCAGAGGGTCGCTACAAGCTTTCTTACGAAAAGACTCATCCCGCGGGCCTTCTTCATTACAGCCATGGCAAAGCCGTTACACAGGTAACACTTGCTCAATTGAAGGATAAGCCGGTTGCCCCCCCTCCGGCTTCTTCAAGCTTTGGCAGTACCAGTAGCGTTAGGAATGCAGCTGCTAGACTTTTAGGAGGGGTCAATGGAACTCGGATGCTAGGGTTTGGTGGGAGCAATGGGACCAGCAAACCTAGTACAGGAAATAAAGTCCCAGCCTCTCCAGCTGCTGCTGCCGTTACGGCACATAGTCCCACTGTTGCAAGCCATTCACCTTCTGTTGTTTCGAGCTATGACGGAGAAGGGACTTACATCATTTTCAATGTTGGAGACACCCTTTTTATCAGTGATTATAATTCTCGTGATAAGGATCCTATCAAAGCAATTCATTTCAGTAGTTCCAGTCCAATTTGCCATGCCTTTGATTCAGATGCAAAGGATGATCATGACCTTTTGATTGGCCTGAACTCTGGAGATGTATATTCAGTGTCATTGAGGCAGCAGTTACAGGATCCTGGAAAGAAGCTTGTAGGGGCCCACCACTACAATAAAGATGGCTCCTTGAACAGCAGCCGTTGTACCGCTATTGCCTGGGTGCCTGGAGGAGATGGCTTTTTCCTGGCTGCACATGCAGATGGTAATTTATATTTTTATCACAAGAATAAAGATGGAACTATTGATGCAACTTTACCAATAATAAAGGATCAGACCCAATTTTCCGTGACACATGCAAAGTCTAGTAAGAGCAACCCTATTGCAAGGTGGCATGTCTGCCAATGTCCCATCAACAGTATTTCTTTCTCTGCTGATGGCCAGTTTTTGGCAACTGTTGGAAGGGATGGTCATTTAAGAATATTTGATTTTGGAAAGGAGCAATTGATTTGTGGTGGTAAAAGCTATTATGGTGCTCTACTATGTTGTGCTTGGAGTCCTGATGGGAAGTATGTCTTGGCTGGAGGAGAAGATGACCTAGTACAGGTGTGGAGTATGGAAGACCGTGCTGTGGTGGCTTGGGGTGAGGGTCACAACTCTTGGGTCAGTGCTGTTGTATTTGATTCATGCTGGACCCTACCTTGTTCTGATGGCGCAGAAGAAAGCACCATGTACCGGTTTGGATCAGTTGGGCAGGATACTCAATTACTTCTATGGGATTTGGTGATGGATGAAATTGTAGTGCCTGTGCGAAGGTGTGCTCCAGGTGGCTCTCCTACATACAGTACGAGCAGCCAATCTTCCTGCATGGAGAATGTTAATTCTGTTGGTCTTCTTCAATCTGCTCCAAGTAGGAGAGATGTTCCAAAACTCTCCCCTGTAGTGGCTCACAGAGTACATGCAGAACCTCTTTCTGGCCTTATTTTTGCAAAGGATTCGATTATCACATGTAGTCATGAGGGACATTTGAAGATCTGGACTAGACCTTGCCGTACAAACAGCCCTGCAGGCAATTCAGTTGTCCCACTCGAATCTTTGAATAATAATGAGTGA___AGTAGCAAAGCTGAGATTTAAACATAAGAGGAATTATCGACAATGTTGTTGTCCAGCTCAAAGATGAAAATGTTCATTACAAGCGTGTACTGCGAAAATCTTATGGCAAAATCAGTTTGCAAGTGTATTGTCTTAAAGAAATGACATCTGTGAAATGGTGGTTATTAGTGCCTTTGCTTCTGATGTATGAAGGCCTAATTACCGTGTTTTAACATTGGCCATCATACTGGTAGCATCCTTGTATGCGCTAAATAGGATAACACTGCCAGCATTGTTGGGGCTTTTGTATTTGGAGGGTGATTTATTTGTGTTGAGTTAGTTTTTATTTGATTTTGTGGAAGCGTGTATATAAAGAAGTTTGAACTTCACAAACAACGTCGATACATTATTTTGATGTATTAGCCAATGCAATATGTACATTAAAAAGTT

Fln Alignment:

sp_v1.1_unigene12812___MAASNAQSTAVKSYFKAPEGRYKLSYEKTHPAGLLHYSHGKAVTQVTLAQLKDKXXXXXXXXXXXXXXXXVRNAAARLLGGVNGTRMLGFGGSNGTSKPSTGNKXXXXXXXXXXXXXXXXXXSHSPSVVSSYDGEGTYIIFNVGDTLFISDYNSRDKDPIKAIHFSSS
B8LLB6_______________MAASNAQSTAVKSYFKAPEGRYKLSYEKTHPAGLLHYSHGKAVTQVTLAQLKDKPVAPPPASSSFSSTSSVRNAAARLLGGVNGTRMLGFGGSNGTSKPSAGNKVPASPATAAVTTHSPTVASHAPSVVSSYDGEGTYVIFNVGDTLFISDYNSRDKDPIKAIHFSSS

SNPs (tot: 15)

Position	A %	C %	G %	T %	Probability
46	66		33		0.997452
62		33		66	0.997452
1986	15		84		0.999986
2121		90	10		0.90298
2171	83		16		0.994512
2175		16		83	0.994512
2176	16			83	0.994512
2180		16		83	0.994512
2186	83			16	0.994512
2190	83	16			0.994512
2267		20		80	0.995493
2269		20		80	0.995493
2270	50	25			0.995533
2272	75	25			0.996473
2273		25	50	25	0.995533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain