SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene12800

Length: 266 nt

Origin of reads: Uma

UniGene Fasta

>sp_v1.1_unigene12800
GGGCAATTCAACGCTTTTACAGTAATGTTTATCTGGATGCTGAAAAACAGGATGCTATTAATGTGTTTCTGGGCCACTTTCAGCCAAAGCAAGGAAAGCCTGCTCTCTGGGAGCTTGAATCTGACCAGAATTGCAATATTGGAAAGCGTGGTGATAGTCTCAGAAATGAAAATACGAGGTCACAGTTTCAGAGGTCTCTATCAGATGGTGACATGCTAATGCAAAATGTTATCTCACAATCTACAACTTCAGATACTGTAGATAAG

Ace file of the UniGene sp_v1.1_unigene12800

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	phosphoinositide 5-phosphatase, putative	-	-	2.0e-21	61%
FL-Next	tr=Predicted protein; subsp. trichocarpa).	-	-	0.0	68%
Blast2go	phosphoinositide phosphatase family protein	-	-	2.39485e-23	81%

Source	ECs	Term	Type	e value	Identity
Blast2go	Phosphoinositide 5-phosphatase.	EC:3.1.3.36	-	2.39485e-23	81%

Source	KEGGs	Term	e value	Identity
Blast2go	Inositol phosphate metabolism	00562	2.39485e-23	81%
Blast2go	Metabolic pathways	01100	2.39485e-23	81%
Blast2go	Phosphatidylinositol signaling system	04070	2.39485e-23	81%

Source	GOs	Term	Type	e value	Identity
Blast2go	phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity	GO:0004439	Molecular Function	2.39485e-23	81%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: B9GXR7

Fln msg: Distance to subject end: 150 aas, your sequence is shorter than subject: 88 - 828

Fln protein: AIQRFYSNVYLDAEKQDAINVFLGHFQPKQGKPALWELESDQNCNIGKRGDSLRNENTRSQFQRSLSDGDMLMQNVISQSTTSDTVDK

Protein Length: 89

Fln nts: GGGCAATTCAACGCTTTTACAGTAATGTTTATCTGGATGCTGAAAAACAGGATGCTATTAATGTGTTTCTGGGCCACTTTCAGCCAAAGCAAGGAAAGCCTGCTCTCTGGGAGCTTGAATCTGACCAGAATTGCAATATTGGAAAGCGTGGTGATAGTCTCAGAAATGAAAATACGAGGTCACAGTTTCAGAGGTCTCTATCAGATGGTGACATGCTAATGCAAAATGTTATCTCACAATCTACAACTTCAGATACTGTAGATAAG

Fln Alignment:

sp_v1.1_unigene12800___IQRFYSNVYLDAEKQDAINVFLGHFQPKQGKPALWELESDQNCNIGKRGDSLRNENTRSQFQRSLSDGDMLMQN
B9GXR7_______________LQRYYSNAYMDAEKQDAINVFLGHFQPQQGKPALWELDSDQHCDVGRRGPDL-VENARSFIKRSLSDGNLRCEN

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
69		75		25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain