SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene12749

Length: 1643 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene12749 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Med15 multi-domain protein	-	-	4.0e-23	19%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	76%
Blast2go	protein	-	-	1.27014e-33	57%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9P2N7

Fln msg: STOP codon was not found. Distance to subject end: 181 aas, your sequence is longer than subject: 499 - 89

Fln protein: MMLGPQIRNQQQASANNLPLTGQPQPQQPMLQQNLQNSISAGGMPSSAGLAPSLSSIPNGLPPMQGMPHNSINNSTSQVLPLLASNQRQLQSRQQQQQQHQHQIHQLLQSKHQPTQQTSSSLLQSQSQQLQQQSQQQQLLSQLQSQTQPMQQQQRLLQQPNPMQQELQRLQTTGGLLQQQQQPSSIEQQKQLLQPRGLPEGSSTSMESSGQTGQPTPADWQEKVYQRLQTLKEMYFLEIKDLFNKLQTKCQQPMQPDQSEKLKHYKTTLHRMMAYFQVPKSSIPPGFKEDKVDAFEKQIQAILNSFTQRKSAPQQQQGQQQLPSQVNNQVQSMQPQEKHVNPLQQMNLQPSVTSMQPNSTTPIQHSSMPLLQQSGGQTSHQNICTTMQSATNLNASQGCGVTSLQQSSLNHLQHNNNINSLQQNNAPLQQNNISFLQQNGMNSLQQNNINALQQHHQVLKQQEMMQAQAQQLKIHQQQHFQYQLSQQQLQYHLPTAAAA

Protein Length: 500

Fln nts: ATACAGTCGCTATAAGTCAGCAAGACTATCGTCGTGACCTTGGCTGTCACTCAGCTATCATTAGAATCAAAAGCTAATGGACCTTCGAATCATTTTCCGGGTAGTTCTCCTGGTAATAACCAGCAGCCTCTAGATCCTGGAGGT_-_ATGATGTTAGGACCACAGATTAGAAATCAACAGCAAGCATCTGCAAATAATCTCCCATTGACTGGGCAACCTCAACCACAACAACCAATGCTCCAACAAAATCTGCAAAATAGCATATCTGCAGGTGGAATGCCGAGCTCAGCTGGTTTGGCACCTTCCTTGTCCTCGATTCCTAATGGTCTGCCACCTATGCAAGGAATGCCACATAATTCAATTAATAACTCAACAAGTCAAGTTTTACCTCTTCTTGCAAGTAATCAGAGGCAGCTACAATCAAGACAACAGCAGCAGCAGCAACACCAGCATCAAATTCACCAGCTTTTGCAATCCAAACATCAGCCAACACAGCAGACATCATCATCACTATTACAATCACAATCCCAGCAGTTGCAGCAACAGTCACAACAGCAGCAGCTTCTCTCTCAGCTCCAATCTCAGACCCAACCAATGCAGCAACAGCAGCGACTGTTACAGCAACCAAATCCAATGCAGCAAGAGCTGCAAAGGCTTCAGACAACTGGTGGTTTGTTGCAGCAGCAGCAGCAACCGAGCTCTATTGAACAACAAAAGCAGCTATTACAACCGCGCGGTCTGCCAGAGGGCTCTTCAACATCAATGGAATCATCAGGTCAAACTGGACAACCAACTCCTGCTGACTGGCAAGAGAAGGTTTATCAGAGACTACAAACTCTGAAGGAGATGTATTTTCTAGAGATAAAAGATTTGTTTAACAAACTTCAAACGAAATGTCAGCAGCCCATGCAACCTGATCAATCCGAAAAGCTTAAGCACTACAAAACTACTTTGCACCGTATGATGGCATATTTTCAAGTTCCAAAGAGCAGTATTCCACCAGGGTTTAAAGAAGACAAGGTTGATGCTTTCGAGAAACAGATTCAAGCCATTCTGAACTCGTTTACGCAGAGGAAATCTGCTCCACAACAACAACAGGGACAGCAACAACTTCCAAGCCAAGTTAACAACCAAGTGCAATCTATGCAACCACAAGAGAAGCATGTTAATCCACTCCAACAGATGAATTTACAGCCTTCGGTTACTTCAATGCAACCAAACAGCACGACACCTATTCAGCACAGTTCCATGCCTCTGTTACAGCAATCTGGTGGACAAACATCACACCAAAATATTTGTACTACGATGCAGTCTGCCACCAATCTAAATGCATCGCAAGGATGTGGTGTAACTTCCTTGCAGCAGAGTTCATTAAACCATCTTCAACATAATAATAATATTAATTCTCTTCAGCAAAATAATGCTCCTCTTCAGCAGAATAATATTAGCTTCTTACAGCAGAATGGCATGAATTCTCTACAACAAAATAATATAAATGCTCTGCAACAACACCACCAAGTTCTAAAGCAGCAAGAAATGATGCAAGCACAAGCACAACAACTTAAGATACATCAGCAGCAGCATTTTCAATATCAGTTGTCGCAACAGCAGCTGCAGTATCATCTACCAACAGCAGCAGCAGCAGC

Fln Alignment:

sp_v1.1_unigene12749___LKEMYFLEIKDLFNKLQTKCQQPMQPDQSEKLKHYKTTLHRMMAYFQVPKSSIPPGFKEDKVDAFEKQIQAILNSFTQRKSA
A9P2N7_______________MKEMYYPEIKELFTKLSNKCQQPMAPDQFEKLKHYKTTLQRVMAYFKVQKSSIPPGFKEDKVDSFERQIQAILGSFKKRHSA

SNPs (tot: 29)

Position	A %	C %	G %	T %	Probability
1141		19		80	1.0
1143	80	19			1.0
1144		19		80	1.0
1145	19		80		1.0
1147			19	80	1.0
1151	20			80	1.0
1153	20	80			1.0
1154		20		80	1.0
1160			63	36	1.0
1199		10		90	0.90298
1200	10		90		0.90298
1202		10		90	0.90298
1203		10	90		0.90298
1204	10			90	0.90298
1205	10			90	0.90298
1207		88	11		0.923564
1209		12	87		0.992554
1592	33			66	0.997452
1593			66	33	0.997452
1594	66	33			0.997452
1595			66	33	0.997452
1599		66	33		0.997452
1602	33	66			0.997452
1603		66		33	0.997452
1605	66			33	0.997452
1606			66	33	0.997452
1607		33	66		0.997452
1613	66			33	0.997452
1614	33	66			0.997452

SSRs (tot: 5)

Start position	End position	Sequence	Length
1	16	GCT GCT GCT GCT GCT G	16
248	259	TAT TAT TAT TAT	12
550	561	TGT TGT TGT TGT	12
955	969	TGC TGC TGC TGC TGC	15
1204	1217	TGC TGC TGC TGC TG	14

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain