SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene12686

Length: 894 nt

Origin of reads: Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene12686

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	alpha-amylase (EC:3.2.1.1)	-	-	53%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	80%
Blast2go	protein	-	-	71%

Source	ECs	Term	Type	e value	Identity
Blast2go	Alpha-amylase.	EC:3.2.1.1	-	0.0	71%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Starch and sucrose metabolism	00500		0.0	71%
Blast2go	Metabolic pathways	01100		0.0	71%

Source	GOs	Term	Type	Identity
Blast2go	cellular carbohydrate catabolic process	GO:0044275	Biological Process	71%
Blast2go	alpha-amylase activity	GO:0004556	Molecular Function	71%
Blast2go	calcium ion binding	GO:0005509	Molecular Function	71%
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	71%

Source	InterPros	Term	Type	Identity
Blast2go	Glycosyl hydrolase, family 13, catalytic domain	IPR006047	-	71%
Blast2go	Glycosyl hydrolase, family 13, subfamily, catalytic domain	IPR006589	-	71%
Blast2go	Alpha-amylase, C-terminal beta-sheet	IPR012850	-	71%
Blast2go	Glycosyl hydrolase, family 13, all-beta	IPR013780	-	71%
Blast2go	Glycoside hydrolase, subgroup, catalytic domain	IPR013781	-	71%
Blast2go	Alpha amylase	IPR015902	-	71%
Blast2go	Glycoside hydrolase, superfamily	IPR017853	-	71%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NUX3

Fln msg: your sequence is shorter than subject: 296 - 448

Fln protein: RRDLGCHSGTLDWGPWAVTVNDKPYACGSGQADTGEDFVSAPDVDHTNPKIQQDLSEWMNWLKSNVGFDGWRFDFVKGYAGNLLGGYIQNTTPKFAVGEMWDTDRQKVVDWVHSTGDRASAFDFPTKGILQDALKSNDLSSLKDSNGKPAGMIGLLPQKAVTFIENHDTGSTQNIWPFPSDKLLQGYTYILTHPGIPTIFYDHFVDGNLKNEIKKLTAIRKRNNINANSNCRIITAESDLYMAAIDEKIVMKIGPRYDVGKLAPPSPDFRIVASGNDYCVWEKTAPPLTKLHRSE*

Protein Length: 297

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGGCACTCTGGACTGGGGACCCTGGGCAGTCACCGTCAACGACAAACCATATGCGTGCGGCTCCGGCCAGGCGGACACCGGCGAGGACTTCGTGTCAGCCCCGGACGTGGACCACACCAATCCCAAGATACAGCAAGATTTGTCGGAGTGGATGAATTGGCTCAAATCCAATGTCGGATTTGATGGGTGGAGGTTCGACTTCGTCAAGGGCTACGCCGGAAACCTGCTGGGCGGCTATATACAAAACACCACCCCCAAATTCGCAGTTGGGGAGATGTGGGACACCGATCGCCAAAAAGTGGTGGATTGGGTGCACTCAACGGGTGACCGAGCCTCCGCCTTCGATTTCCCTACCAAAGGGATCCTGCAGGACGCACTGAAATCCAATGACCTCTCCAGCCTAAAGGATTCCAACGGAAAACCCGCTGGCATGATCGGCCTGTTGCCCCAGAAGGCGGTCACCTTCATTGAAAATCACGACACCGGCTCCACCCAGAACATCTGGCCCTTCCCCTCTGATAAACTGCTACAGGGCTACACCTACATTCTGACTCACCCCGGCATTCCCACCATTTTTTATGATCATTTCGTGGACGGGAATCTGAAGAATGAAATTAAAAAGCTGACTGCCATACGCAAGAGAAATAACATAAATGCTAACAGCAATTGCAGAATTATAACTGCGGAGAGCGACCTGTACATGGCCGCCATTGACGAAAAGATTGTGATGAAGATCGGGCCGAGGTATGACGTAGGAAAGCTGGCCCCGCCTTCTCCAGACTTCCGTATCGTTGCTTCTGGGAACGACTATTGCGTGTGGGAAAAGACAGCTCCTCCGCTGACTAAGCTCCATCGTAGTGAGTGA___CAGGCC

Fln Alignment:

sp_v1.1_unigene12686___GCHSGTLDWGPWAVTVNDKPYACGSGQADTGEDFVSAPDVDHTNPKIQQDLSEWMNWLKSNVGFDGWRFDFVKGYAGNLLGGYIQNTTPKFAVGEMWD--------------TDRQKVVDWVHSTGDRASAFDFPTKGILQDAXXXXXXXXXXXXXGKPAGMIGLLPQKAVTFIENHDTGSTQNIWPFPSDKLLQGYTYILTHPGIPTIFYDHFVDGNLKNEIKKLTAIRKRNNINANSNCRIITAESDLYMAAIDEKIVMKIGPRYDVGKLAPPSPDFRIVASGNDYCVWEKTAPP
A9NUX3_______________GKGDGRLDWGPWAVTVNDKPFACGSGQADTGGDYAAAPDIDHTNPKIQQDLSEWMNWLKSNVGFDGWRFDFAKGYAGNLLAVYLKNTSPKFAVGEVWDDMSYSDGRLAYDQGAHRQRLVDWVHSTGDGAAAFDFTTKGILQEAVKSNELWRLKDSNGKPAGMIGVLPQKAVTFIDNHDTGSTQNIWPFPSDKLLQGYAYILTHPGIPTIFYDHFVDGNLKKEIQNLSAIRKRNNINANSNCRIITAESDLYMAAIDEKIVVKIGSRYDVGNLAPPSPEFRVVASGNGYCVWEKNSSP

SNPs (tot: 20)

Position	A %	C %	G %	T %	Probability
470		80	20		0.995493
472		80		20	0.995493
473		80	20		0.995493
474	80			20	0.995493
475		20	80		0.995493
477	80	20			0.995493
478			80	20	0.995493
479		20	80		0.995493
480	20	80			0.995493
510			83	16	0.994512
512			16	83	0.994512
513		83		16	0.994512
514		83	16		0.994512
518		83		16	0.994512
519	83			16	0.994512
522	83		16		0.994512
526		83	16		0.994512
528		16	83		0.994512
529	16		83		0.994512
532	16	83			0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain