SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene12655

Length: 741 nt

Origin of reads: Biogeco_1 Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene12655

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	SWR1 complex protein, SNF2 family DNA-dependent ATPase (Fragment) n=1 Tax=Physcomitrella patens subsp. patens RepID=A9U2Y8_PHYPA	-	-	78%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	45%
Blast2go	swr1 complex snf2 family dna-dependent atpase	-	-	79%

Source	GOs	Term	Type	Identity
Blast2go	petal formation	GO:0048451	Biological Process	79%
Blast2go	defense response to bacterium	GO:0042742	Biological Process	79%
Blast2go	response to cadmium ion	GO:0046686	Biological Process	79%
Blast2go	DNA binding	GO:0003677	Molecular Function	79%
Blast2go	ATP binding	GO:0005524	Molecular Function	79%
Blast2go	transferase activity	GO:0016740	Molecular Function	79%
Blast2go	protein binding	GO:0005515	Molecular Function	79%
Blast2go	helicase activity	GO:0004386	Molecular Function	79%
Blast2go	SWI/SNF complex	GO:0016514	Cellular Component	79%

Full-Lengther Next Prediction

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
584	66		33		0.997452

SSRs (tot: 1)

Start position	End position	Sequence	Length
700	711	TGC TGC TGC TGC	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain