SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene12640

Length: 2942 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene12640
TCAGAACGGACATGTGGAGCAGCCGGCTCCTCCAAAGGCCCCCTCCAAGGATCTCAAGAAGGCCAAGGACGAGAAGAAAGAGGAAGACCTGTCCGAAGAAGATTTGGCTTTGAAACAGCAGTTAGAGCTGTATGTTGAAAGAGTTCAAGATGTAGATCCGGGGGTGCAGAAGTTGGCTCTGGAGAGTATGAGGCAAGAAATTCGAACTGCAACGAGCTCTATGACATCCGTACCTAAACCTCTGAAATTTCTTCGACCTCATTATGGTACATTAAAAGCATATTATGAAACAATGGCAGATACTGATGTGAAGAATTACCTGGCAGATATCTTATCAGTTTTGGCTTTGACGATGTCTGCAGAAGGGGAAAGGGAAAGTTTAAAGTTTAGGTTGCTTGGCTCCAAGGGAGATATTGGTTCCTGGGGTCATGAATATGTTCGGAATCTTGCTGGAGAAATTGCACAAGAATACCAGAAGCGGCAGATGGAAGAGGCACATGTTGATGATCTGATGGATCTGGTTCAACAAATTGTCTCTTTTCATGTGAAGCACAATGCAGAACCAGAAGCAGTTGACCTTTTAATGGAGGTGGAAGAGTTAGATATGTTAACTGATCATATTGACGCCACAAATTATAAGCGTACATGTTTGTACTTGACAAGCTTTGCAAGTTATGTTCCAGGACCTGATGACATGTTAGTCCTCGACATAGCTTATTCAATTTATACAAAATTTGGAGAATACACAAATGCACTTAGAGTGGCCTTATGTATGCACAACATGCAGTATGTGAAGGCCATATTCACTGCTTGTGTAGATCCTCTTCAGAAGAAGCAGCTCTGCTACATTTTGGCCCGACAGGGAGTGACATTGGAGCTAGATGATGAAATGACAAATGGCAATGAAGAGCAACGGGAACTACTACAGGAAATAATTAATAACATAAAACTAAGTGAGGGTTTTCTGACTCTAGCACGTGATCTTGAGATAATGGAGTCAAAGTCCCCTGAGGATATCTATAAGGCACATTTGATTGATGGGCGTGCAAGTGCGGGTGCAAGTGTTGATTCTGCCCGTCAGAACTTGGCTGCCACATTTGTGAATGCATTCGTCAATGCTGGATTTGGTCAAGACAAATTAATGACTGCTGCTACAGAATCATCTAGTGGTGGCAGCACTGCAAATTGGCTTTTTAAGAACAAAGAACATGGGAAAGCTAGTGCTGCTGCCAGTTTGGGTTTGATTCTCCTTTGGGATGTTGATGCTGGCCTCACACAAATAGACAAGTATTTCAGTAGCAATGATAATCATGCGATTGCTGGAGCTTTGCTCGCAGTTGGTATTGTAAATTGTGGCATCCAAAACGAATGTGATCCTGCGTACGCACTTCTTGCAGAGTACGTCAGTAAGGACGAGTCAAACATTCGAATTGGGGCAATTATGGGCCTTGGGTTAGCATATGCTGGTTCTCAAAAGGAGGATGTGCTTAAACTTCTTTCTCCTATTTTAGTAGACTCTAAGGTTCCGATAGATGTGATTGCCTTCACTGCTATATCTCTTGGATTGATCTATGTTGGATCTTGCAATGATGAAGTGGCTCAGTCAATTATTATTGCCTTGATGGAGAGAAGTGATTCTGAGCTAGGAGAGCCACTTACTCGATTTCTTTGTTTAGGCCTTGGGCTCTTATATCTTGGAAAGCAGGAAAAAGTTGATGCAACTTTGGAAGTAGCAAAGACATTCAATGAGAAAATATCAAGATATTGTCAAGTTACGCTGGAGTCCTGTGCATATGCTGGGACTGGAAATGTTCTCAAGGTACAAAGTCTTCTTGGTCTTTGTGCCGAACATCTAGAGAAGGGTGAGAGTCATCAGGCACCAGCTGTAATTGGTATTGCAATGGTAGCTATGGCAGAGGAACTTGGCCTTGAAATGGCTATACGTTCCTTGGAGCATCTCTTGCAATATGGAGAGCAAAATATCAGGAGATCTGTCCCTTTGGCTCTTGGCCTATTGTCAATATCAAATCCTAAGGTTAATGTGATGGACACATTAAGTAGACTTAGTCATGACACTGATTCGGAAGTTGCTATGGCAGCAACGCTGGCTCTGGGATTAATTGGTGCAGGAACGAATAATGCTCGAATAGCTGGCATGCTTCGAAATCTTTCGAGCTACTATTACAAAGATCCTAGTCTCCTTTTCTGTGTTCGTATTGCTCAAGGTTTGGTGCATCTAGGAAAGGGGTTATTAACTCTGAATCCTTATCATTCAGACCGATTTCTTCTGTCACACTCTGCATTGGCTGGGATTGTAACTTTGCTCCATGCATGTTTGGACATGAAGAATATTATTTTGGGAAAATACCATTATGTACTCTACTTCCTTGTGTTGGCCATGCAGCCAAGGATGCTAATGACAGTGGACGAGAATTTGAAAGCTTTGTCAGTTCCGGTTCGAGTAGGGCAAGCTGTAGATGTTGTTGGTCAGGCTGGTCGCCCAAAGACTATAACTGGATTCCAGACACACACAACTCCTATTCTACTTGCAACTGGTGATAGAGCAGAACTAGCAACCGAAAAGTATATACCTCTATCTTCAGTGTTAGAGGGGTTTGTCATTTTGAAAGAAAATCCTGATTATCAGCATGACAACCGTACCAGCTAATTGAATAAAATCTGATTGTTTTGAATGGATGGATCAAAGGAAGTGACAGTTGATTCCTGAGTTGGAAGGGATTCAGAAGTATTTTCAATTCCTCTTCCAATGCTTAACTCCACATTTTCCATTTGGAAGCTCCTAGCTGGAGGTCATTTCTTTGTGTTCCTGGTTGGGCTTTTCGTTTACCAGATGTCAGAAATATTTTTTTTAACTGTAAAAATGGCAAATGAAAATATTCAATCAATATGGCATTCTTCAANNNNNANTAGATGTCAAAAAA

Ace file of the UniGene sp_v1.1_unigene12640

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	similar to AtRPN1a/RPN1A (26S proteasome regulatory subunit S2 1A); binding; K03028 26S proteasome regulatory subunit N1	-	-	74%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	97%
Blast2go	protein	-	-	89%

Source	GOs	Term	Type	Identity
Blast2go	regulation of protein catabolic process	GO:0042176	Biological Process	89%
Blast2go	ubiquitin-dependent protein catabolic process	GO:0006511	Biological Process	89%
Blast2go	regulation of cell cycle	GO:0051726	Biological Process	89%
Blast2go	binding	GO:0005488	Molecular Function	89%
Blast2go	enzyme regulator activity	GO:0030234	Molecular Function	89%
Blast2go	proteasome regulatory particle, base subcomplex	GO:0008540	Cellular Component	89%
Blast2go	nucleus	GO:0005634	Cellular Component	89%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: B8LRR7

Fln msg: atg_distance in limit (1-15): atg_distance = 5, W2: There is no M at the beginning,

Fln protein: QNGHVEQPAPPKAPSKDLKKAKDEKKEEDLSEEDLALKQQLELYVERVQDVDPGVQKLALESMRQEIRTATSSMTSVPKPLKFLRPHYGTLKAYYETMADTDVKNYLADILSVLALTMSAEGERESLKFRLLGSKGDIGSWGHEYVRNLAGEIAQEYQKRQMEEAHVDDLMDLVQQIVSFHVKHNAEPEAVDLLMEVEELDMLTDHIDATNYKRTCLYLTSFASYVPGPDDMLVLDIAYSIYTKFGEYTNALRVALCMHNMQYVKAIFTACVDPLQKKQLCYILARQGVTLELDDEMTNGNEEQRELLQEIINNIKLSEGFLTLARDLEIMESKSPEDIYKAHLIDGRASAGASVDSARQNLAATFVNAFVNAGFGQDKLMTAATESSSGGSTANWLFKNKEHGKASAAASLGLILLWDVDAGLTQIDKYFSSNDNHAIAGALLAVGIVNCGIQNECDPAYALLAEYVSKDESNIRIGAIMGLGLAYAGSQKEDVLKLLSPILVDSKVPIDVIAFTAISLGLIYVGSCNDEVAQSIIIALMERSDSELGEPLTRFLCLGLGLLYLGKQEKVDATLEVAKTFNEKISRYCQVTLESCAYAGTGNVLKVQSLLGLCAEHLEKGESHQAPAVIGIAMVAMAEELGLEMAIRSLEHLLQYGEQNIRRSVPLALGLLSISNPKVNVMDTLSRLSHDTDSEVAMAATLALGLIGAGTNNARIAGMLRNLSSYYYKDPSLLFCVRIAQGLVHLGKGLLTLNPYHSDRFLLSHSALAGIVTLLHACLDMKNIILGKYHYVLYFLVLAMQPRMLMTVDENLKALSVPVRVGQAVDVVGQAGRPKTITGFQTHTTPILLATGDRAELATEKYIPLSSVLEGFVILKENPDYQHDNRTS*

Protein Length: 890

Fln nts: TCAGAACGGACATGTGGAGCAGCCGGCTCCTCCAAAGGCCCCCTCCAAGGATCTCAAGAAGGCCAAGGACGAGAAGAAAGAGGAAGACCTGTCCGAAGAAGATTTGGCTTTGAAACAGCAGTTAGAGCTGTATGTTGAAAGAGTTCAAGATGTAGATCCGGGGGTGCAGAAGTTGGCTCTGGAGAGTATGAGGCAAGAAATTCGAACTGCAACGAGCTCTATGACATCCGTACCTAAACCTCTGAAATTTCTTCGACCTCATTATGGTACATTAAAAGCATATTATGAAACAATGGCAGATACTGATGTGAAGAATTACCTGGCAGATATCTTATCAGTTTTGGCTTTGACGATGTCTGCAGAAGGGGAAAGGGAAAGTTTAAAGTTTAGGTTGCTTGGCTCCAAGGGAGATATTGGTTCCTGGGGTCATGAATATGTTCGGAATCTTGCTGGAGAAATTGCACAAGAATACCAGAAGCGGCAGATGGAAGAGGCACATGTTGATGATCTGATGGATCTGGTTCAACAAATTGTCTCTTTTCATGTGAAGCACAATGCAGAACCAGAAGCAGTTGACCTTTTAATGGAGGTGGAAGAGTTAGATATGTTAACTGATCATATTGACGCCACAAATTATAAGCGTACATGTTTGTACTTGACAAGCTTTGCAAGTTATGTTCCAGGACCTGATGACATGTTAGTCCTCGACATAGCTTATTCAATTTATACAAAATTTGGAGAATACACAAATGCACTTAGAGTGGCCTTATGTATGCACAACATGCAGTATGTGAAGGCCATATTCACTGCTTGTGTAGATCCTCTTCAGAAGAAGCAGCTCTGCTACATTTTGGCCCGACAGGGAGTGACATTGGAGCTAGATGATGAAATGACAAATGGCAATGAAGAGCAACGGGAACTACTACAGGAAATAATTAATAACATAAAACTAAGTGAGGGTTTTCTGACTCTAGCACGTGATCTTGAGATAATGGAGTCAAAGTCCCCTGAGGATATCTATAAGGCACATTTGATTGATGGGCGTGCAAGTGCGGGTGCAAGTGTTGATTCTGCCCGTCAGAACTTGGCTGCCACATTTGTGAATGCATTCGTCAATGCTGGATTTGGTCAAGACAAATTAATGACTGCTGCTACAGAATCATCTAGTGGTGGCAGCACTGCAAATTGGCTTTTTAAGAACAAAGAACATGGGAAAGCTAGTGCTGCTGCCAGTTTGGGTTTGATTCTCCTTTGGGATGTTGATGCTGGCCTCACACAAATAGACAAGTATTTCAGTAGCAATGATAATCATGCGATTGCTGGAGCTTTGCTCGCAGTTGGTATTGTAAATTGTGGCATCCAAAACGAATGTGATCCTGCGTACGCACTTCTTGCAGAGTACGTCAGTAAGGACGAGTCAAACATTCGAATTGGGGCAATTATGGGCCTTGGGTTAGCATATGCTGGTTCTCAAAAGGAGGATGTGCTTAAACTTCTTTCTCCTATTTTAGTAGACTCTAAGGTTCCGATAGATGTGATTGCCTTCACTGCTATATCTCTTGGATTGATCTATGTTGGATCTTGCAATGATGAAGTGGCTCAGTCAATTATTATTGCCTTGATGGAGAGAAGTGATTCTGAGCTAGGAGAGCCACTTACTCGATTTCTTTGTTTAGGCCTTGGGCTCTTATATCTTGGAAAGCAGGAAAAAGTTGATGCAACTTTGGAAGTAGCAAAGACATTCAATGAGAAAATATCAAGATATTGTCAAGTTACGCTGGAGTCCTGTGCATATGCTGGGACTGGAAATGTTCTCAAGGTACAAAGTCTTCTTGGTCTTTGTGCCGAACATCTAGAGAAGGGTGAGAGTCATCAGGCACCAGCTGTAATTGGTATTGCAATGGTAGCTATGGCAGAGGAACTTGGCCTTGAAATGGCTATACGTTCCTTGGAGCATCTCTTGCAATATGGAGAGCAAAATATCAGGAGATCTGTCCCTTTGGCTCTTGGCCTATTGTCAATATCAAATCCTAAGGTTAATGTGATGGACACATTAAGTAGACTTAGTCATGACACTGATTCGGAAGTTGCTATGGCAGCAACGCTGGCTCTGGGATTAATTGGTGCAGGAACGAATAATGCTCGAATAGCTGGCATGCTTCGAAATCTTTCGAGCTACTATTACAAAGATCCTAGTCTCCTTTTCTGTGTTCGTATTGCTCAAGGTTTGGTGCATCTAGGAAAGGGGTTATTAACTCTGAATCCTTATCATTCAGACCGATTTCTTCTGTCACACTCTGCATTGGCTGGGATTGTAACTTTGCTCCATGCATGTTTGGACATGAAGAATATTATTTTGGGAAAATACCATTATGTACTCTACTTCCTTGTGTTGGCCATGCAGCCAAGGATGCTAATGACAGTGGACGAGAATTTGAAAGCTTTGTCAGTTCCGGTTCGAGTAGGGCAAGCTGTAGATGTTGTTGGTCAGGCTGGTCGCCCAAAGACTATAACTGGATTCCAGACACACACAACTCCTATTCTACTTGCAACTGGTGATAGAGCAGAACTAGCAACCGAAAAGTATATACCTCTATCTTCAGTGTTAGAGGGGTTTGTCATTTTGAAAGAAAATCCTGATTATCAGCATGACAACCGTACCAGCTAA___TTGAATAAAATCTGATTGTTTTGAATGGATGGATCAAAGGAAGTGACAGTTGATTCCTGAGTTGGAAGGGATTCAGAAGTATTTTCAATTCCTCTTCCAATGCTTAACTCCACATTTTCCATTTGGAAGCTCCTAGCTGGAGGTCATTTCTTTGTGTTCCTGGTTGGGCTTTTCGTTTACCAGATGTCAGAAATATTTTTTTTAACTGTAAAAATGGCAAATGAAAATATTCAATCAATATGGCATTCTTCAAactgaAcTAGATGTCAAAAAA

Fln Alignment:

sp_v1.1_unigene12640___QNGHVEQPAPPKAPXXXXXXXXXXXXXXXXXXXXXXXXQQLELYVERVQDVDPGVQKLALESMRQEIRTATSSMTSVPKPLKFLRPHYGTLKAYYETMADTDVKNYLADILSVLALTMSAEGERESLKFRLLGSKGDIGSWGHEYVRNLAGEIAQEYQKRQMEEAHVDDLMDLVQQIVSFHVKHNAEPXXXXXXXXXXXXXXXTDHIDATNYKRTCLYLTSFASYVPGPDDMLVLDIAYSIYTKFGEYTNALRVALCMHNMQYVKAIFTACVDPLQKKQLCYILARQGVTLELDDEMTNGNEEQRELLQEIINNIKLSEGFLTLARDLEIMESKSPEDIYKAHLIDGRASAGASVDSARQNLAATFVNAFVNAGFGQDKLMXXXXXXXXXXXXXNWLFKNKEHGKXXXXXXXXXXXXWDVDAGLTQIDKYFSSNDNHAIAGALLAVGIVNCGIQNECDPAYALLAEYVSKDESNIRIGAIMGLGLAYAGSQKEDVLKLLSPILVDSKVPIDVIAFTAISLGLIYVGSCNDEVAQSIIIALMERSDSELGEPLTRFXXXXXXXXXXXKQEKVDATLEVAKTFNEKISRYCQVTLESCAYAGTGNVLKVQSLLGLCAEHLEKGESHQAPAVIGIAMVAMAEELGLEMAIRSLEHLLQYGEQNIRRSVPLALGLLSISNPKVNVMDTLSRLSHDTDSEVXXXXXXXXXXXXXXXXXXRIAGMLRNLSSYYYKDPSLLFCVRIAQGLVHLGKGLLTLNPYHSDRFLLSHSALAGIVTLLHACLDMKNIILGKYHYVLYFLVLAMQPRMLMTVDENLKALSXXXXXXXXXXXXXXXXXPKTITGFQTHTTPILLATGDRAELATEKYIPLSSVLEGFVILKENPDYQHDNRTS
B8LRR7_______________QNGHVEQPAPPKVPSKDPKKTKDEKKEEDLSEEDLALKQQLELYVERVQDVDPGVQKLALESMRQEIRTATSSMTSVPKPLKFLRPHYGTLKAYYETMEDSDVKNYLADILSVLALTMSAEGERESLKFRLLGSKGDIGSWGHEYVRNHAGEIAQEYQKRQMEEAHVDDLMDLVQQIVSFHVKHNAEPEAVDLLMEVEELDMLTDHIDATNYKRTCLYLTSFASYVPGPDDMLVLDIAYSIYTKFGEYTNALRVALCMHNLQYVKAIFTACVDPLQKKQLCYILARQGVTLELDDEMTNGNEEQRELLQEIINNIKLSEGFLTLARDLEIMESKSPEDIYKAHLIDGRASAGASVDSARQNLAGTFVNAFVNAGFGQDKLMTAATESSSGGNTGNWLFKNKEHGKASAVASLGLILLWDVDAGLTQIDKYFSSNDNHAIAGALLAVGIVNCGIQNECDPAYALLAEYVSKDESNIRIGAIMGLGLAYAGSQKEEVLRLLSPILTDSKVPIDVIAFTAISLGLIYVGSCNDEVAQSIIIALMERSDSELGEPLTRFLCLGLGLLYLGKQEKVDATLEVAKTFNEKISRYCQVTLESCAYAGTGNVLKVQSLLGLCAEHLEKGESHQAPAVIGIAMVAMAEELGLEMAIRSLEHLLQYGEQNIRRSVPLALGLLSISNPKVNVMDTLSRLSHDTDSEVAMAATLALGLIGAGTNNARIAGMLRNLSSYYYKDPSLLFCVRIAQGLVHLGKGLLTLNPYHSDRFLLSHSALAGIITLLHSCLDMKSIILGKYHYVLYFLVLAMQPRMLLTVDENLKPLSIPVRVGQAVDVVGQAGRPKTITGFQTHTTPVLLATGDRAELATEKYIPLSSVLEGFVILKENPDYQHDNRTS

SNPs (tot: 24)

Position	A %	C %	G %	T %	Probability
131	50			50	1.0
229	75	25			0.996473
608		25		75	0.996473
779	87		12		0.992554
1032			12	87	0.992554
1162	11		88		0.923564
1197	87		12		0.992554
1206	88		11		0.923564
1257	87		12		0.992554
1684		11	88		0.923564
1788		14	85		0.993533
1789	14			85	0.993533
1798	14			85	0.993533
1799		14	85		0.993533
2909	16			83	0.994512
2910	16		83		0.994512
2911	16		83		0.994512
2922	20			80	0.995493
2923	20	20		60	0.99255
2924	20	80			0.995493
2925	25			75	0.996473
2926	25		75		0.996473
2927	75			25	0.996473
2928	33	66			0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain