SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene12605

Length: 2752 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene12605
CGTCGTGACCTTGGCTGTCACTCAATATTTTAATGGCATCACCCGACGTAGGATTTCCACTATACCCGTTTTACAACATGAAACTATCACACCAACATGACTATCCCTAGATATTCTATTTAACATCGCCCGGCATTAAGCATGGGGACTCTTCTCCGCATATATTTCAACTCGAACTCACTCGAAGAGGAGGAAGGAATACATCTCCGGGCTTCACAGTCTGACGGGAACAGGAGGAAGGAGCACATCTCCGGGCTTCACAGTCTAAACAATCGAGGTGTATGGTTGGGCGTGCTCTTTTTTAGGGTTGAAGAGTTCTGAAGTCCCGGCAAATTGATTGTAGGCTTAGAGTCAGGGTAGTTGCTTGACAAGAAACAGTGGAAGTGTAGATTAGCGTAGAAGAGTGTTGGGGTTTGCTTATTCTGAGTGGCGATAAGCGATGGAGGAGATTACTGTAAAGCGGGGGCGGGGAAGGCCCCCAAAGCAACACCAGAAAACACCCACTGGAGTCGTCGCTACCCCTAGCGCCCCAGAATTTCATATGCCAAATGCCAACAACAACAATTCAGTAGAGGGCTCCCCCAATGGAGACATTGAGATGTTGGAGAGTATTGTGCCAGGTAGGAGTGGTAGAGGAAGGGGAAGACCAAGGAAACATCCATTGGAAAATGGTTCAGCTCCGGGTTTCGATAAATCCGTTAGTCAAGAAAATATCTCTGGAGTCGATAAGGACCTGAAAAAAATGAAAAGTGAGCGGTCTTTGGAATCTCCTCTACGGAGAAGTTCGCGATATACTTTATCGTCACCTCATACTTTGAGTGATGTAATCAGACAGAATGCGATTACGGATTCGGTGGCCGATGATGTCAAGGGTTCTCCATTCATGAATGCAGTAGTTAAAGTTTTCTGTGTTCATACAGAACCGAATTTTTCACTTCCATGGCAGCGCAAGCGTCAATTTAGCTCGAATAGCAGTGGGTTTATTATTGATGGACGCAGAGTGCTGACAAATGCCCATTCGGTAGAGCACCATACACAAGTGAAGCTCAAGAAGCGAGGATCAGATACAAAGTACTTGGCTACTGTGCTTGCGATTGGCACTGAATGTGATATTGCAATGCTAACTGTGAGCGATGATGAGTTTTGGGAAGGAGTATCTCCAGTGCAATTTGGAGCGCTGCCTACTTTGCAGGATGGTGTCACTGTTGTAGGTTATCCAATTGGTGGTGACACAATCTCAGTGACTAGTGGAGTTGTATCACGCATTGAAGTTCTTTCATATGTCCACGGGGCCACCGAGCTTCTTGGAGTCCAGATTGATGCTGCTATAAATGCTGGAAATTCTGGGGGACCTGCTTTCAATGACAAGGGCCAGTGTGTGGGAATTGCATTTCAATCACTTAAACACGAAGATGCAGAAAATATTGGATATGTTATACCAACTCCGGTTATTACACACTTTATCACGGATTATGAACGCTCGGGAGACTACACAGGATTTCCCATACTTGGAATAGAATGGCAGAAAATGGAGAATCCTGATTTGCGTATTGCAATGGGAATGATGTCTAACCAGAAAGGTGTTCGTGTAAGAAGGGTAGAACCAACAGCTCCAGCAGCGAAATTCTTGATATCATCAGATATTCTTCTCAGTTTTGATGGAATTGATATTGCTAATGATGGAACTGTTCCTTTCAGGCGTGGTGAGCGCATAGGCTTTAGCTACCTTGTTTCAAAGAAGTACACAGGAGAGCATGCCAGAGTTAAAATTCTACGTGATTCTGAGTATCATGAATTTGATATCGAGCTTTCTACTCACAAACGCCTAGTCCCTGCACATATTAAGGGGAAGCCTCCATCTTATTACATCATAGCTGGCTTTGTATTTTCAGCTCTGTCCGTGCCATACCTTCGTTCTGAATATGGAAAAGATTATGACTATGATGCTCCAGTAAAACTGTTGGACAAGCTACTGCATTCTATGGCACGAACAGAAGATGAACAGTTGGTGGTGATTTCTCAGGTTCTGGTTGCAGATATAAATATTGGTTACGAGGATATTGTAAATACACAGGTCCTGGCTTTCAATGGAGTGCGTGTAAAAAATCTCAGGCATCTTGCAGACATGGTGGAAAACTGTGAGGATGAATTTCTGAGATTTGACCTGGAGTATCAACAGATCGTTGTTTTGGGAACAAAAAAATCGAAGGAAGCAACTCCTGATATTCTTGCAACACATTGCATACCTTCAGCTATATCTGATGATTTGAAAACGTGAATCAGTTTTCCAGAGGATCTGAATTATCACGGAAATTCACATGCAATTACAGACAAAATGTGGGCTGCATAACTGTTATCGAATCTGCTCCTTTATTCCCTTGCTATGTGGTTTACTTCTTTCTACATTTGTTTTTGAGTCTAGGCCTGGAGCTCTTTGTATCGCTAGATCTATGTTGATAGTGCATGGACCAACACCTTGGCGTTGAATCAATACCTTAATATGGTGTTTATTCATCAGAGTTTTGCAAACTGCTCTTGTATTTGTAAGCAATAGTCTTACAAAAGATCATACATATGTGGATGGATATTTACATGAAGAATCGTACAATCTGATTTTGCTTAGATTTATGTTTTTTAAATTATACATCACCAAATTTTGAAGAAATTCCAAGCAGTTGGAATCTGTATTGATATTTGGGCGAGACAGAGGTACAATCCCATCTACACATTACCTCGTGGATATGTGTTTTTG

Ace file of the UniGene sp_v1.1_unigene12605

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	serine endopeptidase degp2, putative (EC:1.3.1.74)	-	-	81%
FL-Next	sp=Protease Do-like 9; Arabidopsis thaliana (Mouse-ear cress).	-	-	80%
Blast2go	serine endopeptidase	-	-	91%

Source	ECs	Term	Type	e value	Identity
Blast2go	2-alkenal reductase.	EC:1.3.1.74	-	0.0	91%
Blast2go	Hydrolases, Acting on peptide bonds (peptide hydrolases), Serine endopeptidases.	EC:3.4.21.-	-	0.0	91%

Source	GOs	Term	Type	Identity
Blast2go	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	91%
Blast2go	oxidation-reduction process	GO:0055114	Biological Process	91%
Blast2go	proteolysis	GO:0006508	Biological Process	91%
Blast2go	2-alkenal reductase [NAD(P)] activity	GO:0032440	Molecular Function	91%
Blast2go	DNA binding	GO:0003677	Molecular Function	91%
Blast2go	protein binding	GO:0005515	Molecular Function	91%
Blast2go	serine-type endopeptidase activity	GO:0004252	Molecular Function	91%
Blast2go	nucleolus	GO:0005730	Cellular Component	91%

Source	InterPros	Term	Type	Identity
Blast2go	Peptidase S1/S6, chymotrypsin/Hap	IPR001254	-	91%
Blast2go	PDZ domain	IPR001478	-	91%
Blast2go	Peptidase S1C, HrtA/DegP2/Q/S	IPR001940	-	91%
Blast2go	Peptidase cysteine/serine, trypsin-like	IPR009003	-	91%
Blast2go	Serine endopeptidase DegP2	IPR015724	-	91%
Blast2go	AT hook, DNA-binding motif	IPR017956	-	91%
Blast2go	AT hook-like	IPR020478	-	91%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: Q9FL12

Fln msg:

Fln protein: MEEITVKRGRGRPPKQHQKTPTGVVATPSAPEFHMPNANNNNSVEGSPNGDIEMLESIVPGRSGRGRGRPRKHPLENGSAPGFDKSVSQENISGVDKDLKKMKSERSLESPLRRSSRYTLSSPHTLSDVIRQNAITDSVADDVKGSPFMNAVVKVFCVHTEPNFSLPWQRKRQFSSNSSGFIIDGRRVLTNAHSVEHHTQVKLKKRGSDTKYLATVLAIGTECDIAMLTVSDDEFWEGVSPVQFGALPTLQDGVTVVGYPIGGDTISVTSGVVSRIEVLSYVHGATELLGVQIDAAINAGNSGGPAFNDKGQCVGIAFQSLKHEDAENIGYVIPTPVITHFITDYERSGDYTGFPILGIEWQKMENPDLRIAMGMMSNQKGVRVRRVEPTAPAAKFLISSDILLSFDGIDIANDGTVPFRRGERIGFSYLVSKKYTGEHARVKILRDSEYHEFDIELSTHKRLVPAHIKGKPPSYYIIAGFVFSALSVPYLRSEYGKDYDYDAPVKLLDKLLHSMARTEDEQLVVISQVLVADINIGYEDIVNTQVLAFNGVRVKNLRHLADMVENCEDEFLRFDLEYQQIVVLGTKKSKEATPDILATHCIPSAISDDLKT*

Protein Length: 614

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATATTTTAATGGCATCACCCGACGTAGGATTTCCACTATACCCGTTTTACAACATGAAACTATCACACCAACATGACTATCCCTAGATATTCTATTTAACATCGCCCGGCATTAAGCATGGGGACTCTTCTCCGCATATATTTCAACTCGAACTCACTCGAAGAGGAGGAAGGAATACATCTCCGGGCTTCACAGTCTGACGGGAACAGGAGGAAGGAGCACATCTCCGGGCTTCACAGTCTAAACAATCGAGGTGTATGGTTGGGCGTGCTCTTTTTTAGGGTTGAAGAGTTCTGAAGTCCCGGCAAATTGATTGTAGGCTTAGAGTCAGGGTAGTTGCTTGACAAGAAACAGTGGAAGTGTAGATTAGCGTAGAAGAGTGTTGGGGTTTGCTTATTCTGAGTGGCGATAAGCG_-_ATGGAGGAGATTACTGTAAAGCGGGGGCGGGGAAGGCCCCCAAAGCAACACCAGAAAACACCCACTGGAGTCGTCGCTACCCCTAGCGCCCCAGAATTTCATATGCCAAATGCCAACAACAACAATTCAGTAGAGGGCTCCCCCAATGGAGACATTGAGATGTTGGAGAGTATTGTGCCAGGTAGGAGTGGTAGAGGAAGGGGAAGACCAAGGAAACATCCATTGGAAAATGGTTCAGCTCCGGGTTTCGATAAATCCGTTAGTCAAGAAAATATCTCTGGAGTCGATAAGGACCTGAAAAAAATGAAAAGTGAGCGGTCTTTGGAATCTCCTCTACGGAGAAGTTCGCGATATACTTTATCGTCACCTCATACTTTGAGTGATGTAATCAGACAGAATGCGATTACGGATTCGGTGGCCGATGATGTCAAGGGTTCTCCATTCATGAATGCAGTAGTTAAAGTTTTCTGTGTTCATACAGAACCGAATTTTTCACTTCCATGGCAGCGCAAGCGTCAATTTAGCTCGAATAGCAGTGGGTTTATTATTGATGGACGCAGAGTGCTGACAAATGCCCATTCGGTAGAGCACCATACACAAGTGAAGCTCAAGAAGCGAGGATCAGATACAAAGTACTTGGCTACTGTGCTTGCGATTGGCACTGAATGTGATATTGCAATGCTAACTGTGAGCGATGATGAGTTTTGGGAAGGAGTATCTCCAGTGCAATTTGGAGCGCTGCCTACTTTGCAGGATGGTGTCACTGTTGTAGGTTATCCAATTGGTGGTGACACAATCTCAGTGACTAGTGGAGTTGTATCACGCATTGAAGTTCTTTCATATGTCCACGGGGCCACCGAGCTTCTTGGAGTCCAGATTGATGCTGCTATAAATGCTGGAAATTCTGGGGGACCTGCTTTCAATGACAAGGGCCAGTGTGTGGGAATTGCATTTCAATCACTTAAACACGAAGATGCAGAAAATATTGGATATGTTATACCAACTCCGGTTATTACACACTTTATCACGGATTATGAACGCTCGGGAGACTACACAGGATTTCCCATACTTGGAATAGAATGGCAGAAAATGGAGAATCCTGATTTGCGTATTGCAATGGGAATGATGTCTAACCAGAAAGGTGTTCGTGTAAGAAGGGTAGAACCAACAGCTCCAGCAGCGAAATTCTTGATATCATCAGATATTCTTCTCAGTTTTGATGGAATTGATATTGCTAATGATGGAACTGTTCCTTTCAGGCGTGGTGAGCGCATAGGCTTTAGCTACCTTGTTTCAAAGAAGTACACAGGAGAGCATGCCAGAGTTAAAATTCTACGTGATTCTGAGTATCATGAATTTGATATCGAGCTTTCTACTCACAAACGCCTAGTCCCTGCACATATTAAGGGGAAGCCTCCATCTTATTACATCATAGCTGGCTTTGTATTTTCAGCTCTGTCCGTGCCATACCTTCGTTCTGAATATGGAAAAGATTATGACTATGATGCTCCAGTAAAACTGTTGGACAAGCTACTGCATTCTATGGCACGAACAGAAGATGAACAGTTGGTGGTGATTTCTCAGGTTCTGGTTGCAGATATAAATATTGGTTACGAGGATATTGTAAATACACAGGTCCTGGCTTTCAATGGAGTGCGTGTAAAAAATCTCAGGCATCTTGCAGACATGGTGGAAAACTGTGAGGATGAATTTCTGAGATTTGACCTGGAGTATCAACAGATCGTTGTTTTGGGAACAAAAAAATCGAAGGAAGCAACTCCTGATATTCTTGCAACACATTGCATACCTTCAGCTATATCTGATGATTTGAAAACGTGA___ATCAGTTTTCCAGAGGATCTGAATTATCACGGAAATTCACATGCAATTACAGACAAAATGTGGGCTGCATAACTGTTATCGAATCTGCTCCTTTATTCCCTTGCTATGTGGTTTACTTCTTTCTACATTTGTTTTTGAGTCTAGGCCTGGAGCTCTTTGTATCGCTAGATCTATGTTGATAGTGCATGGACCAACACCTTGGCGTTGAATCAATACCTTAATATGGTGTTTATTCATCAGAGTTTTGCAAACTGCTCTTGTATTTGTAAGCAATAGTCTTACAAAAGATCATACATATGTGGATGGATATTTACATGAAGAATCGTACAATCTGATTTTGCTTAGATTTATGTTTTTTAAATTATACATCACCAAATTTTGAAGAAATTCCAAGCAGTTGGAATCTGTATTGATATTTGGGCGAGACAGAGGTACAATCCCATCTACACATTACCTCGTGGATATGTGTTTTTG

Fln Alignment:

sp_v1.1_unigene12605___VKGSPFMNAVVKVFCVHTEPNFSLPWQRKRQFSSNSSGFIIDGRRVLTNAHSVEHHTQVKLKKRGSDTKYLATVLAIGTECDIAMLTVSDDEFWEGVSPVQFGALPTLQDGVTVVGYPIGGDTISVTSGVVSRIEVLSYVHGATELLGVQIDAAINAGNSGGPAFNDKGQCVGIAFQSLKHEDAENIGYVIPTPVITHFITDYERSGDYTGFPILGIEWQKMENPDLRIAMGMMSNQKGVRVRRVEPTAPAAKFLISSDILLSFDGIDIANDGTVPFRRGERIGFSYLVSKKYTGEHARVKILRDSEYHEFDIELSTHKRLVPAHIKGKPPSYYIIAGFVFSALSVPYLRSEYGKDYDYDAPVKLLDKLLHSMARTEDEQLVVISQVLVADINIGYEDIVNTQVLAFNGVRVKNLRHLADMVENCEDEFLRFDLEYQQIVVLGTKKSKEATPDILATHCIPSAISDDLKT
Q9FL12_______________VKVVPSMDAVVKVFCVHTEPNFSLPWQRKRQYSSGSSGFIIGGRRVLTNAHSVEHHTQVKLKKRGSDTKYLATVLAIGTECDIALLTVTDDEFWEGVSPVEFGDLPALQDAVTVVGYPIGGDTISVTSGVVSRMEILSYVHGSTELLGLQIDAAINSGNSGGPAFNDKGKCVGIAFQSLKHEDAENIGYVIPTPVIVHFIQDYEKHDKYTGFPVLGIEWQKMENPDLRKSMGMESHQKGVRIRRIEPTAPESQVLKPSDIILSFDGVNIANDGTVPFRHGERIGFSYLISQKYTGDSALVKVLRNKEILEFNIKLAIHKRLIPAHISGKPPSYFIVAGFVFTTVSVPYLRSEYGKEYEFDAPVKLLEKHLHAMAQSVDEQLVVVSQVLVSDINIGYEEIVNTQVVAFNGKPVKNLKGLAGMVENCEDEYMKFNLDYDQIVVLDTKTAKEATLDILTTHCIPSAMSDDLKT

SNPs (tot: 30)

Position	A %	C %	G %	T %	Probability
463		11	88		0.923564
464	11		88		0.923564
466			87	12	0.992554
467		87	12		0.992554
468	14		85		0.993533
470			85	14	0.993533
479	12	87			0.992554
481		87		12	0.992554
482	88		11		0.923564
484	88		11		0.923564
1124	93		6		0.989189
1453		4		95	0.982677
1496	96		4		0.980808
1499	96		4		0.980808
1882		10		90	0.90298
1887		10		90	0.90298
2181	88		11		0.999937
2186	11			88	0.999937
2192		11	88		0.999937
2193		11	88		0.999937
2194		11	88		0.999937
2196	88		11		0.999937
2198	76			5	1.0
2405		90	10		0.90298
2407		10		90	0.90298
2408	10			90	0.90298
2409			10	90	0.90298
2411		10		90	0.90298
2413		10		90	0.90298
2731		7		92	0.999602

SSRs (tot: 1)

Start position	End position	Sequence	Length
553	564	CAA CAA CAA CAA	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain