SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene12576

Length: 475 nt

Origin of reads: Biogeco_1

UniGene Fasta

>sp_v1.1_unigene12576
ACAGGTTGAAGGGAAATTTAACAGAAGAAGAATGCCCACCTTCGGCTAATCCTTTGCCCGTTGCTATTGATGTTAGCACTGAGTGCTGGGCTAAAGCTGAGCTTAGGACTAGAGAACTTATTTATCAAATCCAACCAACTGTTGTTTCGGAGAATCAAAGGAAGGCTGTTGTTCAGTATGTTCAACGTCTTGTTCGCCGACGTATTGGATGTGAGGTTTTTGCCTTTGGATCTGTGCCACTGAAAACATATCTTTCTGATGGAGACATTGACTTGACTGCTTTTAGCAAGCAGAAACAGCTTACAAAGGTGTGGGGAAATCAAGTGCGTTCTGCCCTTGAGGAAGAAGGGCGCCACAAGGATGCTGAATTTAGAGTAAAAGATGTTCAGTACATAGATGCTGCTGAGGTCAAGCTTGTGAAATGTCTTGTTGGTAAACATTGTTGTAGACATAACTAAACCTATAATCAGATTGG

Ace file of the UniGene sp_v1.1_unigene12576

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Nucleotidyltransferase domain containing protein, expressed; Oryza sativa subsp. japonica (Rice).	-	-	0.0	60%
Blast2go	protein	-	-	1.69751e-29	70%

Source	ECs	Term	Type	e value	Identity
Blast2go	Transferases, Transferring phosphorous-containing groups, Nucleotidyltransferases.	EC:2.7.7.-	-	1.69751e-29	70%

Source	KEGGs	Term	e value	Identity
Blast2go	Amino sugar and nucleotide sugar metabolism	00520	1.69751e-29	70%
Blast2go	Lipopolysaccharide biosynthesis	00540	1.69751e-29	70%
Blast2go	Biosynthesis of siderophore group nonribosomal peptides	01053	1.69751e-29	70%
Blast2go	Metabolic pathways	01100	1.69751e-29	70%

Source	GOs	Term	Type	e value	Identity
Blast2go	nucleotidyltransferase activity	GO:0016779	Molecular Function	1.69751e-29	70%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Nucleotidyl transferase domain	IPR002934	-	1.69751e-29	70%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: tr_plants

Fln subject: Q10Q39

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 1165 aas, W2: There is no M at the beginning, your sequence is shorter than subject: 152 - 1316

Fln protein: RLKGNLTEEECPPSANPLPVAIDVSTECWAKAELRTRELIYQIQPTVVSENQRKAVVQYVQRLVRRRIGCEVFAFGSVPLKTYLSDGDIDLTAFSKQKQLTKVWGNQVRSALEEEGRHKDAEFRVKDVQYIDAAEVKLVKCLVGKHCCRHN*

Protein Length: 153

Fln nts: ACAGGTTGAAGGGAAATTTAACAGAAGAAGAATGCCCACCTTCGGCTAATCCTTTGCCCGTTGCTATTGATGTTAGCACTGAGTGCTGGGCTAAAGCTGAGCTTAGGACTAGAGAACTTATTTATCAAATCCAACCAACTGTTGTTTCGGAGAATCAAAGGAAGGCTGTTGTTCAGTATGTTCAACGTCTTGTTCGCCGACGTATTGGATGTGAGGTTTTTGCCTTTGGATCTGTGCCACTGAAAACATATCTTTCTGATGGAGACATTGACTTGACTGCTTTTAGCAAGCAGAAACAGCTTACAAAGGTGTGGGGAAATCAAGTGCGTTCTGCCCTTGAGGAAGAAGGGCGCCACAAGGATGCTGAATTTAGAGTAAAAGATGTTCAGTACATAGATGCTGCTGAGGTCAAGCTTGTGAAATGTCTTGTTGGTAAACATTGTTGTAGACATAACTAAACCTATAATCAGATTGG

Fln Alignment:

sp_v1.1_unigene12576___ECWAKAELRTRELIYQIQPTVVSENQRKAXXXXXXXXXXXXIGCEVFAFGSVPLKTYLSDGDIDLTAFSKQKQLTKVWGNQVRSALEEEGRHKDAEFRVKDVQYIDAAEVKLVKCLV
Q10Q39_______________ERWAAAEVRTAELIARIQPNADSERRRRAVYDYVRRLITNCLSCQVFTFGSVPLKTYLPDGDIDVTAFSDSEELKDTWANLVRDALEHEEKSENAEFRVKEVQYIQ-AEVKIIKCLV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain