SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene12548

Length: 467 nt

Origin of reads: Uma

UniGene Fasta

>sp_v1.1_unigene12548
GTGCAAACTCCCTTCTGGATCTCGTTGTGTTCGGTCGAGCGTGTGCTCATCACATCAAGGATACCTTGACTCCCGGAAAGTCCCACAAGGCTATTCCTGACGAAGCTGGCCTTGGGAGCATAGAGTTCTTGGACAAGATCAGAAACGCTGATGGCCCCAAGCCCACTGCCGATATAAGATTGGAGATGCAAAAGGCTATGCAGTCTGATGCTGCTGTCTTCCGTACGCAAGAGAGTCTCGACCACGGTGTCGAGAAAATTCGCCAGATTTACAAATCGTTTGAGAATGTTGGCATCAAGGACAGGAGCATGATCTGGAACTCCGATCTTGTGGAGACTCTTGAGTTACGCAACCTTCTTCAGTGTGCGGTTCAAACTATCACGGCCGCAGCAGCTCGCAAGGAGTCCCGAGGAGCCCATGCACGAGAGGATTACCCTGAGCGTGATGATGACAACTGGATGAAGCAC

Ace file of the UniGene sp_v1.1_unigene12548

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Succinate dehydrogenase flavoprotein subunit n=1 Tax=Coprinopsis cinerea okayama7#130 RepID=A8PA35_COPC7	-	-	83%
FL-Next	sp=Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial; Oryza sativa subsp. japonica (Rice).	-	-	58%
Blast2go	succinate dehydrogenase flavoprotein subunit	-	-	84%

Source	ECs	Term	Type	e value	Identity
Blast2go	Succinate dehydrogenase (ubiquinone).	EC:1.3.5.1	-	0.0	84%

Source	KEGGs	Term	Identity
Blast2go	Citrate cycle (TCA cycle)	00020	84%
Blast2go	Oxidative phosphorylation	00190	84%
Blast2go	Biosynthesis of phenylpropanoids	01061	84%
Blast2go	Biosynthesis of terpenoids and steroids	01062	84%
Blast2go	Biosynthesis of alkaloids derived from shikimate pathway	01063	84%
Blast2go	Biosynthesis of alkaloids derived from ornithine, lysine and nicotinic acid	01064	84%
Blast2go	Biosynthesis of alkaloids derived from histidine and purine	01065	84%
Blast2go	Biosynthesis of alkaloids derived from terpenoid and polyketide	01066	84%
Blast2go	Biosynthesis of plant hormones	01070	84%
Blast2go	Metabolic pathways	01100	84%
Blast2go	Biosynthesis of secondary metabolites	01110	84%

Source	GOs	Term	Type	Identity
Blast2go	tricarboxylic acid cycle	GO:0006099	Biological Process	84%
Blast2go	electron transport chain	GO:0022900	Biological Process	84%
Blast2go	electron carrier activity	GO:0009055	Molecular Function	84%
Blast2go	flavin adenine dinucleotide binding	GO:0050660	Molecular Function	84%
Blast2go	succinate dehydrogenase (ubiquinone) activity	GO:0008177	Molecular Function	84%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Fumarate reductase/succinate dehydrogenase flavoprotein, C-terminal	IPR004112	-	0.0	84%
Blast2go	Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal	IPR015939	-	0.0	84%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q6ZDY8

Fln msg: Distance to subject end: 36 aas, your sequence is shorter than subject: 155 - 630

Fln protein: ANSLLDLVVFGRACAHHIKDTLTPGKSHKAIPDEAGLGSIEFLDKIRNADGPKPTADIRLEMQKAMQSDAAVFRTQESLDHGVEKIRQIYKSFENVGIKDRSMIWNSDLVETLELRNLLQCAVQTITAAAARKESRGAHAREDYPERDDDNWMKH

Protein Length: 156

Fln nts: GTGCAAACTCCCTTCTGGATCTCGTTGTGTTCGGTCGAGCGTGTGCTCATCACATCAAGGATACCTTGACTCCCGGAAAGTCCCACAAGGCTATTCCTGACGAAGCTGGCCTTGGGAGCATAGAGTTCTTGGACAAGATCAGAAACGCTGATGGCCCCAAGCCCACTGCCGATATAAGATTGGAGATGCAAAAGGCTATGCAGTCTGATGCTGCTGTCTTCCGTACGCAAGAGAGTCTCGACCACGGTGTCGAGAAAATTCGCCAGATTTACAAATCGTTTGAGAATGTTGGCATCAAGGACAGGAGCATGATCTGGAACTCCGATCTTGTGGAGACTCTTGAGTTACGCAACCTTCTTCAGTGTGCGGTTCAAACTATCACGGCCGCAGCAGCTCGCAAGGAGTCCCGAGGAGCCCATGCACGAGAGGATTACCCTGAGCGTGATGATGACAACTGGATGAAGCAC

Fln Alignment:

sp_v1.1_unigene12548___ANSLLDLVVFGRACAHHIKDTLTPGKSHKAIPDEAGLGSIEFLDKIRNADGPKPTADIRLEMQKAMQSDAAVFRTQESLDHGVEKIRQIYKSFENVGIKDRSMIWNSDLVETLELRNLLQCAVQTITAAAARKESRGAHAREDYPERDDDNWMKH
Q6ZDY8_______________ANSLLDIVVFGRACANRVAETAKPGEKQKPLQKSAGEKTIAWLDKLRNANGSLPTSKIRLNMQRVMQNNAAVFRTQETLEEGCKLITKAWESYHDVKISDRSLIWNSDLIETIELENLLINACITMHSAEARKESRGAHAREDFTKRDDEQWMKH

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain