SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene12544

Length: 550 nt

Origin of reads: Biogeco_1 Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene12544
GGCCTTTTGTATCATACTGTCGGTGCATAATGTAGATTCTACTCCTGCAATCAGTTCAAATTCAATTCTGGTTGCCCTGTTGGACTCACGCTACACAGAGTTGATCGAGCTGGTGGAGAAGGCCTCGCTGTTACAACCATTGGAAGAGATGGTGAGCAATAACAATATCACAATTTTGGCCCCTCAAAATGCTCATTTGGAGAAGAATTTGGACCCAGAATTCAAGAGGTTCATGGGTGAGCCCGGCAATCTCAATTCGTTGCAAAGATTGTTGCAGGCCCATATTATTCCCAGGAGGATAACAGCCGAGGAATGGAGCAATAATGCAACCCAGGAAGCACTTTCCAAAGATGCTCTGCAATTTTCTGTGAAGGAAAACAATGTAAAAACCGTAGATCTGGCTGTTTTAACACATCCCAATGCTGCTGTGAGACCTGATGGCGTTATTCATGGAATTGATAGGCTTCTGGTGCCTAAGTCTGTGCAAGATGATTTTAATGCATGGAGACATGGGGTGGTCTTGGCTGTGAAACCAGAGGGGGCCCCTGCT

Ace file of the UniGene sp_v1.1_unigene12544 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Fasciclin-like arabinogalactan protein 16 n=1 Tax=Gossypium hirsutum RepID=A9XTM1_GOSHI	-	-	2.94273e-44	58%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	64%
Blast2go	beta-ig-h3 domain-containing protein	-	-	0.0	69%

Source	GOs	Term	Type	e value	Identity
Blast2go	cell adhesion	GO:0007155	Biological Process	0.0	69%

Source	InterPros	Term	Type	e value	Identity
Blast2go	FAS1 domain	IPR000782	-	0.0	69%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NXQ4

Fln msg: Distance to subject end: 257 aas, your sequence is shorter than subject: 183 - 464

Fln protein: AFCIILSVHNVDSTPAISSNSILVALLDSRYTELIELVEKASLLQPLEEMVSNNNITILAPQNAHLEKNLDPEFKRFMGEPGNLNSLQRLLQAHIIPRRITAEEWSNNATQEALSKDALQFSVKENNVKTVDLAVLTHPNAAVRPDGVIHGIDRLLVPKSVQDDFNAWRHGVVLAVKPEGAPA

Protein Length: 184

Fln nts: GGCCTTTTGTATCATACTGTCGGTGCATAATGTAGATTCTACTCCTGCAATCAGTTCAAATTCAATTCTGGTTGCCCTGTTGGACTCACGCTACACAGAGTTGATCGAGCTGGTGGAGAAGGCCTCGCTGTTACAACCATTGGAAGAGATGGTGAGCAATAACAATATCACAATTTTGGCCCCTCAAAATGCTCATTTGGAGAAGAATTTGGACCCAGAATTCAAGAGGTTCATGGGTGAGCCCGGCAATCTCAATTCGTTGCAAAGATTGTTGCAGGCCCATATTATTCCCAGGAGGATAACAGCCGAGGAATGGAGCAATAATGCAACCCAGGAAGCACTTTCCAAAGATGCTCTGCAATTTTCTGTGAAGGAAAACAATGTAAAAACCGTAGATCTGGCTGTTTTAACACATCCCAATGCTGCTGTGAGACCTGATGGCGTTATTCATGGAATTGATAGGCTTCTGGTGCCTAAGTCTGTGCAAGATGATTTTAATGCATGGAGACATGGGGTGGTCTTGGCTGTGAAACCAGAGGGGGCCCCTGCT

Fln Alignment:

sp_v1.1_unigene12544___LSVHNVDSTPAISSNSILVALLDSRYTELIELVEKASLLQPLEEMVSNNNITILAPQNAHLEKNLDPEFKRFMGEPGNLNSLQRLLQAHIIPRRITAEEWSNNATQEALSKDALQFSVKENNVKTVDLAVLTHPNAAVRPDGVIHGIDRLLVPKSVQDDFNAWRHGVVLAVKPEGAP
A9NXQ4_______________LPSNSSSSQVAINSNSVLVALLDSHYTELAELVEKALLLQTLEEVVGSSNVTIFAPQNDILERKLDPEFKRFLHEPGNLKALQKLLMFHVVPRRIVAEDW-RNGTHQTLAKDRLKLSMK-GDKKTIDLASVAHPNAVVRPDGVIHGIDRMLIPKSVQDDFSKWRSGVSLAVMPQGAP

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
213		25		75	0.996473
218		66		33	0.997452
263		20	80		0.995493
264	80	20			0.995493
315	75		25		0.996473
486	25			25	0.995533
489	25			75	0.996473
532		66		33	0.997452
535		66		33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain