SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene12510

Length: 1233 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene12510 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	lysosomal pro-X carboxypeptidase, putative (EC:3.4.16.2); K01285 lysosomal Pro-X carboxypeptidase [EC:3.4.16.2]	-	-	63%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	60%
Blast2go	serine carboxypeptidase s28 family protein	-	-	76%

Source	ECs	Term	Type	e value	Identity
Blast2go	Hydrolases, Acting on peptide bonds (peptide hydrolases), Serine-type carboxypeptidases.	EC:3.4.16.-	-	0.0	76%

Source	ECs	Term	Type	e value	Identity
AutoFact	Lysosomal Pro-Xaa carboxypeptidase.	EC:3.4.16.2	-	0.0	63%

Source	GOs	Term	Type	Identity
Blast2go	proteolysis	GO:0006508	Biological Process	76%
Blast2go	serine-type carboxypeptidase activity	GO:0004185	Molecular Function	76%
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	76%
Blast2go	lysosome	GO:0005764	Cellular Component	76%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Peptidase S28	IPR008758	-	0.0	76%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LPX2

Fln msg: your sequence is shorter than subject: 358 - 509

Fln protein: NSYKSTETLGYLNSQQALADYATLILDLKKNLSAQASPTIVFGGSYGGMLAAWFRLKYPHVAIGAVASSAPILQFDNIVPENTFYDIVSNDFKQASESCFSVIRQSWDDLQEKSTEDGGLHEISKIFRTCKDLESINPVRSWLEEAFTYTAMTDYPTETNFLMPLPAYPVTEMCNVINSFPQGTDTLSRVFAAANIYYNYSNTEKCFEMEHESDAHGLSGWDWQACTEMVMPMNYSVESIFPPSSYDYLSYQRYCQKRYGVIPRPHWITTEFGGHDISTVLQHSASNIIFSNGLMDPWSGGGVLRNISDSVVALVAQKGAHHGDFRFSTSEDPDWLVQQRRQEVELIESWLQEYYNH*

Protein Length: 359

Fln nts: AACTCTTACAAGAGCACAGAAACATTGGGATATCTTAATTCCCAGCAGGCCTTGGCAGATTATGCCACTCTCATATTAGATTTGAAGAAGAATCTGTCTGCCCAAGCCTCCCCAACTATAGTTTTCGGCGGTTCTTATGGTGGAATGCTAGCTGCTTGGTTCCGACTGAAATATCCCCATGTAGCCATTGGGGCTGTTGCATCATCTGCGCCCATCTTGCAGTTCGATAATATTGTGCCTGAAAATACCTTCTATGACATTGTTTCAAACGATTTCAAGCAAGCAAGCGAGAGTTGTTTCAGTGTTATCAGACAATCATGGGACGATCTACAAGAGAAATCCACGGAAGATGGAGGTCTACACGAGATAAGCAAAATTTTCCGAACTTGCAAGGATCTCGAAAGTATAAATCCTGTCAGGTCCTGGCTGGAAGAGGCTTTCACTTACACTGCAATGACTGACTACCCAACTGAGACTAATTTTCTGATGCCTCTACCTGCATACCCTGTAACAGAGATGTGCAATGTAATTAACAGCTTCCCCCAAGGGACTGACACCCTATCAAGAGTATTTGCTGCTGCTAACATATACTACAATTATTCAAACACAGAGAAGTGCTTCGAAATGGAGCATGAAAGCGATGCTCATGGTCTCAGTGGATGGGACTGGCAGGCCTGTACAGAAATGGTAATGCCGATGAATTATTCAGTTGAGAGCATTTTCCCACCTTCTAGTTATGACTACCTTTCATATCAACGCTATTGCCAAAAGCGGTATGGAGTGATACCAAGACCACACTGGATAACAACAGAATTCGGCGGTCATGATATTAGCACTGTTCTCCAACACTCTGCAAGCAATATCATCTTTTCAAATGGGTTAATGGATCCATGGAGTGGGGGAGGAGTACTCAGGAATATATCAGACAGCGTTGTAGCGCTAGTTGCCCAAAAAGGAGCCCACCATGGTGATTTTCGTTTCTCGACAAGTGAAGACCCTGACTGGCTGGTACAGCAGCGCAGGCAAGAGGTTGAGCTTATTGAAAGCTGGTTGCAGGAATACTACAACCACTGA___TTGCCTCTGGATGATGCAATCTTAAATTGATTGTTTTTCCTCTTTCGATTTTGGGTTAAAGATGTCAAGGACATTTGACCTATTGACTTTTCAATTCGTAAAGGACATTTTTTTGAGATTTTTAATCTATTTCATACTCTATATGGCAATCTATTTTAA

Fln Alignment:

sp_v1.1_unigene12510___SYKSTETLGYLNSQQALADYATLILDLKKNLSAQASPTIVFGGSYGGMLAAWFRLKYPHVAIGAVASSAPILQFDNIVPENTFYDIVSNDFKQASESCFSVIRQSWDDLQEKSTEDGGLHEISKIFRTCKDLESINPVRSWLEEAFTYTAMTDYPTETNFLMPLPAYPVTEMCNVINSFPQGTDTLSRVFAAANIYYNYSNTEKCFEMEHESDAHGLSGWDWQACTEMVMPMNYSVE-SIFPPSSYDYLSYQRYCQKRYGVIPRPHWITTEFGGHDISTVLQHSASNIIFSNGLMDPWSGGGVLRNISDSVVALVAQKGAHHGDFRFSTSEDPDWLVQQRRQEVELIESWLQEYY
B8LPX2_______________AYKDGDSLSYLTAEQALADFATLIVDLKKNLSAEACPVVLFGGSYGGMLAAWMRLKYPHIAIGALASSAPILQFEDIVPSDTFYNLVSNDFKRESENCFKVIQQSWKALETYGERDEGLQNLSKKFRMCRDLNSTDEIEDWLNSAYSNLAMVDYPYPASFLMPLPAYPIKEVCKVIDSFSNGTDVLDRIFAGVSVYYNYTGEEKCFDV--NDDPHGENGWNWQACTEMVMPMSSNPESSIFPQFTFDIESYTKNCLNMFGVEPRPHWITTEFGGQDIKRVLKNYGSNIIFSNGLLDPWSGGGVLQNISNSIVALVTELGAHHLDLRAATENDPLWLVEQRNAEMKIINKWMNEYY

SNPs (tot: 11)

Position	A %	C %	G %	T %	Probability
148		66		33	0.997452
178		40		60	1.0
257	66		33		0.997452
529	85	14			0.993533
530	85	14			0.993533
531		14		85	0.993533
533	85			14	0.993533
862	33			66	0.997452
866	33			66	0.997452
869	33	66			0.997452
1027		90		10	0.90298

SSRs (tot: 1)

Start position	End position	Sequence	Length
946	958	GCTT GCTT GCTT G	13

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain