SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene12498

Length: 812 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene12498

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	alpha-glucosidase 1 (AGLU1); K01187 alpha-glucosidase [EC:3.2.1.20]	-	-	51%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	56%
Blast2go	protein	-	-	70%

Source	ECs	Term	Type	e value	Identity
AutoFact		EC:3.2.1.2-	-	0.0	51%

Source	GOs	Term	Type	e value	Identity
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	0.0	70%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Glycoside hydrolase, family 31	IPR000322	-	0.0	70%
Blast2go	Glycoside hydrolase-type carbohydrate-binding	IPR011013	-	0.0	70%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LKI6

Fln msg: Separated hits, possible frame ERROR between 637 and 649, Distance to subject end: 565 aas, your sequence is shorter than subject: 270 - 908

Fln protein: RVYITDSEKQRWEVPRDILPRYNGVYSNSTDTDKDEEDSNDHLHELLFTYSNNPFGFAITRRSSGETLFNSTAMYNNGDLFGNMVFKDQYLEISTALPFSASLYGLGESTRPGFRLNRNESYTLWNLDIGSVNLYVDLYGSHPFYMDVREGGVAHGVLLLNSNGMDVQYGGSYLTYRAIGGVLDFYFFSGPSPLAVVQQYTQLIGRPAPMPxxxxxGCHQCRYGYENISVVESVVDGYAAAKIPLETIWTDIDYMDGYKDFTLDPLNFPE

Protein Length: 271

Fln nts: GAGAGTTTATATTACTGATAGTGAGAAGCAGCGATGGGAAGTTCCAAGAGATATTCTGCCTAGATATAATGGGGTGTATTCTAACAGCACTGATACTGATAAAGATGAAGAGGATTCTAATGACCATCTTCATGAATTGCTGTTTACTTACTCTAACAATCCGTTCGGCTTTGCAATCACAAGGCGTTCAAGTGGAGAAACTCTCTTTAATTCAACTGCGATGTATAACAATGGTGATTTATTTGGAAATATGGTGTTTAAAGACCAATACTTGGAGATCTCTACTGCCCTTCCATTTTCTGCTTCTCTGTATGGATTAGGAGAGAGCACCAGGCCTGGATTTCGTCTCAACAGGAATGAGAGCTATACACTCTGGAATTTAGACATTGGCAGTGTGAATCTGTATGTGGATCTATATGGGTCTCATCCATTTTATATGGATGTGAGAGAGGGTGGTGTTGCTCATGGGGTTCTCCTGCTGAATAGCAATGGCATGGATGTTCAGTATGGGGGATCCTACTTGACATATAGAGCAATTGGGGGAGTCTTGGATTTTTATTTTTTCTCAGGTCCTTCTCCGCTTGCTGTTGTTCAACAGTACACACAACTCATTGGTCGTCCTGCTCCAATGCCATAxxxxxxxxxxxxTGGCTGTCACCAATGCAGGTATGGATATGAAAATATTTCGGTTGTTGAATCAGTTGTAGATGGATATGCAGCAGCAAAAATTCCTCTAGAAACGATTTGGACAGACATTGATTATATGGATGGCTACAAGGATTTTACTCTAGATCCTCTGAATTTCCCTGAGAT

Fln Alignment:

sp_v1.1_unigene12498___RVYITDSEKQRWEVPRDILPRYNGVYSNSTDTDKDEEDSNDHLH-------ELLFTYSNNPFGFAITRRSSGETLFNSTAMYNNGDLFGNMVFKDQYLEISTALPFSASLYGLGESTRP-GFRLNRNESYTLWNLDIGSVNLYVDLYGSHPFYMDVREGGVAHGVLLLNSNGMDVQYGGSYLTYRAIGGVLDFYFFSGPSPLAVVQQYTQLIGRPAPMPYxxxxGCHQCRYGYENISVVESVVDGYAAAKIPLETIWTDIDYMDGYKDFTLDPLNFPE
B8LKI6_______________RVHITDAETKRWEVPQELLSREQ-VPADLKISSRKAKSTNSAFGFSELSGGELIFSFVANPFGFAIKRKSNGDVLFNSS--------YGSLVFKDQYLELTTGLPSTASLYGLGENTQPEGIKIAPKESYTLYTTDISAINLNTDLYGSHPFYMDVRNGGTSHGVLLMNSNGMDVFYTGNALTYKVIGGVLDFYFFAGTSPLDVVQQYTALIGRPVAMPYxxxxGFHQCRWGYQNVSDITNVVDNYNKSQIPLDVIWNDDDHMDAAKDFTLDPVNYPE

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
382		25		75	0.996473
391		25	75		0.996473
397		25		75	0.996473
404			75	25	0.996473
641		66	33		0.997452
645	66	33			0.997452
646		66		33	0.997452
647		66		33	0.997452
654			66	33	0.997452
771	33		66		0.997452

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain