SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene12464

Length: 1106 nt

Origin of reads: Biogeco_1 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene12464 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	INT2; INT2 (INOSITOL TRANSPORTER 2); carbohydrate transmembrane transporter/ sugar:hydrogen symporter	-	-	63%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	74%
Blast2go	inositol transporter	-	-	78%

Source	GOs	Term	Type	Identity
Blast2go	myo-inositol transport	GO:0015798	Biological Process	78%
Blast2go	transmembrane transport	GO:0055085	Biological Process	78%
Blast2go	signaling	GO:0023052	Biological Process	78%
Blast2go	oxidoreductase activity	GO:0016491	Molecular Function	78%
Blast2go	sugar:hydrogen symporter activity	GO:0005351	Molecular Function	78%
Blast2go	myo-inositol:hydrogen symporter activity	GO:0005366	Molecular Function	78%
Blast2go	plasma membrane	GO:0005886	Cellular Component	78%
Blast2go	integral to membrane	GO:0016021	Cellular Component	78%

Source	InterPros	Term	Type	Identity
Blast2go	Sugar/inositol transporter	IPR003663	-	78%
Blast2go	General substrate transporter	IPR005828	-	78%
Blast2go	Sugar transporter, conserved site	IPR005829	-	78%
Blast2go	Major facilitator superfamily domain, general substrate transporter	IPR016196	-	78%
Blast2go	Major facilitator superfamily domain	IPR020846	-	78%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LLI2

Fln msg: Distance to subject end: 278 aas, your sequence is shorter than subject: 311 - 589

Fln protein: MEGGPAKADALEFTTCINVIRQNPFVLKLALSAGLGGFLFGYDTGVISGALLYIRDDFPAVDRSTTLQETIVSTAIAGAIIGAGFGGWMSDHFGRRKTLLQADLVFILGAILMAAAPIPAVLIMGRICVGLGIGMASMTSPLYISEASPTKVRGAIVSTNGFLITGGQFLSYCINLAFTKAPGTWRWMLGIAAVPALLQLFLMFYLPESPRWLYRKKREAEAIAIMKRIHPPEDLENEIQELKQSVEQEIELHGPSQKIQFSQLWKVKEVRYALIAGCGIQIFQQFVGINTVMYYSPTIVQLAGFASNTVA

Protein Length: 312

Fln nts: GGAGGAGAGAGTGGAGATTCTGATAGATTTTGCTAAAGCTCTGCTGCTCTAGTTTGCTGAGGTTGAAGAGCAAAGGAGGTCTGGATATTGCCTGAATTGTAGCACAGAAGAGGTTGACAGAAAGTTGCTTTTGACAATCTTCAATATCCTCAAGAGTGTAGTTCAGAGAAAAG_-_ATGGAAGGTGGACCTGCAAAGGCCGATGCCCTAGAATTTACAACATGTATTAACGTGATCAGACAAAACCCATTTGTACTCAAGTTGGCATTATCTGCAGGCCTTGGAGGCTTTCTTTTTGGCTATGATACAGGAGTTATATCTGGTGCGCTCTTGTACATTAGAGATGATTTTCCAGCAGTGGACCGTTCTACAACTCTACAGGAAACTATTGTGAGCACTGCCATTGCTGGGGCCATCATTGGCGCTGGATTCGGGGGGTGGATGAGTGACCATTTTGGGAGGAGGAAAACGCTGCTGCAAGCTGATCTTGTATTTATTCTGGGGGCAATTCTCATGGCTGCTGCACCAATCCCTGCAGTTTTGATAATGGGTAGAATCTGTGTGGGGTTGGGTATAGGCATGGCATCAATGACTTCACCCCTTTATATTTCAGAGGCCTCGCCCACGAAAGTGAGGGGCGCTATAGTGAGTACTAATGGTTTTCTCATCACAGGAGGACAATTCCTGTCATATTGCATCAACCTGGCATTCACCAAGGCACCTGGTACTTGGAGATGGATGCTTGGAATTGCAGCTGTTCCTGCACTTCTACAGCTTTTCTTAATGTTCTATTTACCTGAATCTCCTCGTTGGTTGTACAGAAAGAAAAGGGAAGCAGAGGCAATCGCCATCATGAAGAGGATACATCCCCCTGAGGATCTTGAAAATGAAATTCAAGAGCTCAAGCAATCTGTTGAGCAAGAAATTGAGTTGCACGGGCCTTCACAAAAGATTCAGTTCAGTCAATTATGGAAGGTCAAAGAAGTGAGATATGCACTTATTGCAGGTTGTGGAATTCAAATATTTCAACAATTTGTTGGCATCAACACTGTCATGTACTACAGTCCTACCATTGTACAATTGGCTGGATTTGCGTCCAACACAGTTGCT

Fln Alignment:

sp_v1.1_unigene12464___MEGGPAKADALEFTTCINVIRQNPFVLKXXXXXXXXXXXXGYDTGVISGALLYIRDDFPAVDRSTTLQETIVSTXXXXXXXXXXXXGWMSDHFGRRKTLLQADLVFILGAILMAAAPIPAVLIMGRICVGLGIGMASMTSPLYISEASPTKVRGAIVSTNGFLITGGQFLSYCINLAFTKAPGTWRWMLGIAAVPALLQLFLMFYLPESPRWLYRKKREAEAIAIMKRIHPPEDLENEIQELKQSVEQEIELHGPSQKIQFSQLWKVKEVRYALIAGCGIQIFQQFVGINTVMYYSPTIVQLAGFASNTVA
B8LLI2_______________MEGGPTKADAEEFTNCLSLIRQNPFVLRLALSAGLGGLLFGYDTGVISGALLYIRDDFEEVDHSTKLQETIVSMAVAGAIVGAAFGGWVNDRFGRRFALLLADSLFFLGAIIMAAAPNASVLISGRVFVGLGVGMASMTAPLYISESSPAKVRGALVSTNGFLITGGQFLSYLINLAFTKAPGTWRWMLGVAGMPALLQFILMLTLPESPRWLYRKKGEAEAVAVLKRIYSPDEVEEEIQSLKESVETEVQELGTTDKVRYWQLWTTKEIRYALFVGVGLQVFQQFVGINTVMYYSPTIVQLAGYASNQTA

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
9		25		75	0.996473
200	33		66		0.997452
608		66		33	0.997452
755	40			60	1.0
776	40		60		1.0
865	40		60		1.0
911	20		80		0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain