SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene12438

Length: 620 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene12438

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial n=1 Tax=Glycine max RepID=MCCA_SOYBN	-	-	3.00004e-41	52%
FL-Next	sp=Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial; Glycine max (Soybean) (Glycine hispida).	-	-	0.0	36%
Blast2go	mcca methylcrotonoyl- carboxylase	-	-	5.63897e-41	68%

Source	ECs	Term	Type	e value	Identity
Blast2go	Methylcrotonoyl-CoA carboxylase.	EC:6.4.1.4	-	5.63897e-41	68%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Valine, leucine and isoleucine degradation	00280		5.63897e-41	68%
Blast2go	Metabolic pathways	01100		5.63897e-41	68%

Source	GOs	Term	Type	e value	Identity
Blast2go	leucine catabolic process	GO:0006552	Biological Process	5.63897e-41	68%
Blast2go	cobalt ion binding	GO:0050897	Molecular Function	5.63897e-41	68%
Blast2go	nucleotide binding	GO:0000166	Molecular Function	5.63897e-41	68%
Blast2go	methylcrotonoyl-CoA carboxylase activity	GO:0004485	Molecular Function	5.63897e-41	68%
Blast2go	mitochondrion	GO:0005739	Cellular Component	5.63897e-41	68%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Biotin/lipoyl attachment	IPR000089	-	5.63897e-41	68%
Blast2go	Biotin-binding site	IPR001882	-	5.63897e-41	68%
Blast2go	Single hybrid motif	IPR011053	-	5.63897e-41	68%

Full-Lengther Next Prediction

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
57	75			25	0.996473
150		16		83	0.994512
153	83	16			0.994512
154	83	16			0.994512
312		66	33		0.997452
313		66	33		0.997452
314	66		33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain