SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene12382

Length: 1200 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene12382

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Chlorophyll A/B binding protein, putative n=1 Tax=Ricinus communis RepID=B9R8V1_RICCO	-	-	76%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	68%
Blast2go	light-harvesting complex	-	-	80%

Source	GOs	Term	Type	Identity
Blast2go	photosynthesis, light harvesting	GO:0009765	Biological Process	80%
Blast2go	response to blue light	GO:0009637	Biological Process	80%
Blast2go	response to far red light	GO:0010218	Biological Process	80%
Blast2go	chlorophyll binding	GO:0016168	Molecular Function	80%
Blast2go	light-harvesting complex	GO:0030076	Cellular Component	80%
Blast2go	chloroplast	GO:0009507	Cellular Component	80%
Blast2go	membrane	GO:0016020	Cellular Component	80%

Source	InterPros	Term	Type	Identity
Blast2go	Chlorophyll A-B binding protein, plant	IPR001344	-	80%
Blast2go	Chlorophyll A-B binding protein	IPR022796	-	80%
Blast2go	Chlorophyll a/b binding protein domain	IPR023329	-	80%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5AAE1

Fln msg: your sequence is longer than subject: 327 - 146

Fln protein: MVMAAMTQNLFNPFKGRRIPDLNSTLKHNPTARINPCKASWQEVAGVLIFSAIPFTAVKAIANSPLAARLQERMLRTKSLAMKEALEREAATQRARKESVWYGKDRPRWLGMIPHDYPKYLDGEAPGDYGFDIAGLSKDRMDFNKNFNYEVLHARWAMLAALGVVIPELLDRFGVVDFIEPVWWRVGYAKLKGDTLDYLGIPGLHIAGAQGVLVIAICQFLLMVGPEYARYCGIEALEPLGIYLPGDENYPGGILFDPLGLSKDPVSFEELKVKEIKNGRLAMVAWLGFYAQAALTGKGPIENLYDHISDPVHNNVTTFVSSLLSP*

Protein Length: 328

Fln nts: ATGGGGATATGTGCTGTTGATGACTCATATCAAACGCCCGTATTTCGTTTCAAGTGAACCACTAGTCTTATGGTTAATACTGTTATGTCGTAATTAGCTCCTCTGCCACTCGCAA_-_ATGGTCATGGCCGCCATGACACAGAATTTATTCAATCCCTTCAAAGGTCGGAGGATTCCTGATCTCAATTCCACTTTAAAGCATAATCCCACTGCCAGAATCAATCCATGCAAAGCATCATGGCAGGAGGTGGCTGGTGTTTTAATATTCTCTGCAATTCCTTTCACCGCAGTGAAGGCAATTGCTAATAGTCCTCTGGCAGCGCGGTTACAAGAGCGAATGCTGCGGACCAAATCGTTGGCTATGAAGGAAGCCCTGGAAAGAGAAGCTGCCACGCAGAGGGCCAGAAAAGAAAGTGTGTGGTATGGGAAAGATCGGCCTCGCTGGCTTGGCATGATTCCTCATGACTATCCAAAGTATCTTGATGGAGAGGCACCTGGTGATTATGGCTTTGACATAGCAGGCCTAAGCAAGGACCGAATGGATTTCAATAAAAATTTCAACTATGAAGTGCTTCATGCTCGCTGGGCCATGCTTGCAGCTCTAGGTGTTGTCATCCCTGAATTGCTGGATCGGTTTGGAGTTGTGGATTTTATTGAGCCTGTCTGGTGGCGAGTTGGTTACGCAAAGCTCAAGGGTGACACTCTAGATTACCTTGGAATACCAGGATTGCACATTGCTGGAGCTCAAGGAGTTTTAGTCATTGCAATTTGCCAGTTTCTTCTCATGGTTGGCCCTGAGTATGCAAGGTACTGCGGGATTGAAGCTTTAGAACCTCTAGGCATCTATTTACCGGGAGACGAAAATTACCCTGGAGGAATATTGTTTGACCCATTGGGGTTGTCAAAGGACCCTGTTTCTTTTGAAGAATTGAAAGTAAAAGAAATTAAAAATGGGCGTCTGGCTATGGTAGCTTGGCTAGGTTTCTATGCTCAAGCCGCCCTCACTGGCAAAGGACCTATAGAAAACTTATATGACCACATAAGTGATCCTGTTCATAACAACGTAACAACTTTTGTAAGTAGTCTTTTGTCACCGTAA___GCTGTATTGGTTGGTAATATGTATTTTATTAATGCCATTGGCTAATAACCATATATTTGTACCAGTTCCCGTGTTTAAAATATTCCGTTTCTATTCGTTTTTCG

Fln Alignment:

sp_v1.1_unigene12382___MVMAAMTQNLFNPFKGRRIPDLNSTLKHNPTARINPCKASWQEVAGVLIFSAIPFTAVKAIANSPLAARLQERMLRTKSLAMKEALEREAATQRARKESVWYGKDRPRWLGMIPHDYPKYLDGEAPGDYGFDIAGLSKDRMDFNKNFNYEVLHARWAMLAALGVVIPELLDRFGVVDFIEPVWWRVGYAKLK
D5AAE1_______________MVMAAMTHGLFNPFKGGRIPAVSSTIKHNPTARIHPCKASWQELAGVLIFSAIPFTAVKAIANSPLAARLQERMQGTKSLAMKEAPEREAATQRARKES-------------------------------------------------YEVLHARWAMLAALGVVIPELLDRFGVVDFIEPVWWRVGYAKLK

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
726	66	33			0.997452
728			66	33	0.997452
729	66	33			0.997452
730			33	66	0.997452
736	66	33			0.997452
743			66	33	0.997452
744	66	33			0.997452
745	33		66		0.997452
919			33	66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain