SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene12342

Length: 1488 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene12342

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	EXL2 (EXORDIUM LIKE 2) [Arabidopsis thaliana] gb\|AAG41473.1\|AF326891_1 putative phi-1 protein [Arabidopsis thaliana] gb\|AAK00390.1\|AF339708_1 putative phi-1 protein [Arabidopsis thaliana] gb\|AAK55719.1\|AF380638_1 AT5g64260/MSJ1_10 [Arabidopsis thaliana] d	-	-	54%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	72%
Blast2go	protein	-	-	77%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Phosphate-induced protein 1	IPR006766	-	0.0	77%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LQ56

Fln msg: Separated hits, possible frame ERROR between 612 and 653,

Fln protein: MACSFSWLRLSALLHIAVCIVILSAVPASGQSRKLGALVEGPSVVLTYHDGPLLSASGLTQLHVIWYGKFTPVQRSIVGDFLQSLGAVALEGTRSKPSASAWWKTTEKYVGAASNKAEPSSVIMLGKQKVDQDYSLGKSLKRADIASLVEAAVxxxxxxxxxxxxxxxENKATKENAVYLVLTSEDVAVEGFCMSSCGFHDSLNVLSHQKATRNRTTGKEKEKEPRHLLPYAWVGNSASQCPGQCAWPFHQPMYGPQTPPLVAPNGDMGIDGMIINIATVLAGAATNTFNNGYFQGDSAAPLEAVSACTGIYGKGAYPGFPGELLVDKMTGASYNSHGVNGRTFLLPAMWDPATRTCETLV*

Protein Length: 363

Fln nts: ATTGATGGGGACAGCAATCGGTTTTCACTTGTCGCCTATTTGTGTTTTCACCTTGTGTTTGTAACAAGCTATCGAGGTTACTGTGGTTTGTTCCTCTGAATCCAAGGGAGCTCGCGTCTCTTTGCTGTGTGATAGATAGAGAGCGTTAAA_-_ATGGCTTGTTCTTTTTCTTGGCTTCGACTGTCTGCCTTGCTACATATAGCGGTGTGTATAGTGATATTATCTGCAGTCCCTGCTTCTGGACAGTCGAGAAAACTTGGGGCTTTGGTGGAAGGGCCATCTGTTGTCTTGACTTACCACGATGGTCCTCTGCTCTCTGCCAGTGGATTGACCCAACTCCACGTAATCTGGTATGGGAAATTCACCCCTGTTCAACGCTCCATTGTGGGGGATTTTCTTCAATCTCTTGGAGCAGTGGCGTTAGAGGGGACAAGAAGTAAACCCTCCGCGTCTGCTTGGTGGAAGACCACTGAGAAGTATGTGGGCGCAGCCTCTAACAAGGCGGAGCCTTCCAGTGTTATAATGCTAGGAAAGCAGAAGGTAGACCAAGATTATTCCCTCGGCAAGTCACTCAAGAGGGCTGACATTGCTTCTCTAGTTGAAGCTGCTGTTAAxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxCGAGAATAAAGCGACAAAAGAAAATGCTGTATACTTGGTGCTTACCTCTGAGGATGTTGCCGTTGAGGGTTTCTGCATGAGTTCCTGCGGATTCCATGACAGTCTCAATGTATTATCACACCAGAAGGCAACAAGAAACCGAACGACGGGGAAGGAGAAGGAGAAGGAGCCTCGTCATCTTTTACCATACGCGTGGGTTGGGAACTCTGCAAGTCAGTGTCCTGGACAGTGCGCATGGCCATTTCATCAACCCATGTATGGACCCCAGACTCCCCCTTTGGTGGCACCAAACGGTGACATGGGTATCGATGGGATGATAATCAACATTGCCACCGTTCTTGCAGGAGCAGCTACTAATACATTTAACAACGGCTATTTTCAAGGGGACTCTGCTGCGCCTCTAGAGGCGGTGTCTGCCTGTACGGGAATATATGGAAAGGGGGCTTATCCTGGGTTTCCCGGTGAGCTATTAGTTGATAAAATGACGGGGGCAAGCTATAACTCCCATGGAGTTAATGGGAGAACATTTTTGTTACCAGCTATGTGGGATCCTGCTACCAGAACTTGCGAGACATTAGTATGA___ACATTTTTGTAATTTCAAGTCTGGGATTTTAAAAGGAAGCATGAACGTAGAGTTAGGTGCATAGGGTGCAGCGTTTCTGCAGATAGAATCTTAAATATGTATTCTTTATTCTTTACACAGGGTTTTTATATTCCCTGACCTGCATCATGTCTTCCTCTAAAGGAATTTCCCTTTGTTAAACACTGCTTCAAATTTAACCTCTACTACCACTAAGTTATTCATCTTTCATTTTCTTTATCAATAGTGTCAATGCT

Fln Alignment:

sp_v1.1_unigene12342___MACSFSWLRLSALLHIAVCIVILSAVPASGQSRKLGALVEGPSVVLTYHDGPLLSASGLTQLHVIWYGKFTPVQRSIVGDFLQSLGAVALEGTRSK-PSASAWWKTTEKYVGAA------SNKAEPSSVIMLGKQKVDQDYSLGKSLKRADIASLVEAAVKxxxxxxxxxxxxxxENKATKENAVYLVLTSEDVAVEGFCMSSCGFHDSLNVLSHQKATRNRTTGKEKEKEPRHLLPYAWVGNSASQCPGQCAWPFHQPMYGPQTPPLVAPXXXXXXXXXXXXXATVLAGAATNTFNNGYFQGDSAAPLEAVSACTGIYGKGAYPGFPGELLVDKMTGASYNSHGVNGRTFLLPAMWDPATRTCETLV
B8LQ56_______________MAGYVSWPRLTAMLQMVVCMAILCSSPAAGHLRKLAALVEEPSVVLTYHDGPLLSTSGVIPVHLIWYGKFTPVQRTIVGDFLQSLGAKTLEGTNAKLPSASTWWKTTEKYEGAASNKAAPSNKAAPSSVIMLGKQKVDQDYSLGNSLKRSDIAALVQAAVKxxxxxxxxxxxxxxKSNAGNANAVYLVLTSEDVTVEGFCMSSCGFHGSLNLLPHQQSTKSRMMGKEEKHQ--QLLPYAWVGNSASQCPGQCAWPFHQPIYGPQTPPLVAPNGDMGIDGMIINIATVLAGAATNPFNSGYFQGDAAAPLEAVSACPGIYGKGSYPGFPGELLVDKTTGASYNAHGVNGRQFLLPAMWDPATKSCQALV

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
807	7		92		0.999532
896		92		7	0.999664
967		9		90	0.999872
988	10	90			0.999898
1369	12			87	0.992554
1371			12	87	0.992554
1372	12			87	0.992554

SSRs (tot: 2)

Start position	End position	Sequence	Length
630	647	GCCTCG GCCTCG GCCTCG	18
802	820	GAAGGA GAAGGA GAAGGA G	19

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain