SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene12320

Length: 473 nt

Origin of reads: Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene12320

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	TIR/P-loop/LRR n=1 Tax=Pinus taeda RepID=Q8L8J0_PINTA	-	-	3.0e-21	52%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	70%
Blast2go	tir p-loop lrr	-	-	9.35627e-28	72%

Source	GOs	Term	Type	e value	Identity
Blast2go	protein binding	GO:0005515	Molecular Function	9.35627e-28	72%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Leucine-rich repeat	IPR001611	-	9.35627e-28	72%

Full-Lengther Next Prediction

SNPs (tot: 26)

Position	A %	C %	G %	T %	Probability
100		33	66		1.0
103	66		33		0.997452
104	33		66		0.997452
109	66		33		0.997452
171			87	12	0.992554
172		12	75	12	0.975346
173			62	37	1.0
178		14		85	0.993533
184	66		33		1.0
185	83			16	0.994512
186		50	50		1.0
187		16	83		0.994512
188	16		83		0.994512
192		16		83	0.994512
195	16		83		0.994512
196	80	20			0.995493
211	20	80			0.995493
216		40		60	1.0
220			60	40	1.0
221	60			40	1.0
222			80	20	0.995493
226			60	40	1.0
227		60	40		1.0
229	20	60		20	0.99255
233	40	60			1.0
235	40		60		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain