SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene12318

Length: 2289 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene12318
GTCTATTTAATTGCAGCAATCAGTTCTACTTTTGCAGAAATAATGAGACTAATGGCAGAATGCAGCAATGGAGATCGATCTCCCACCGAGAGAGTTTCTGAAAGCGATCATCTGCAGCAATCGCAACATCTTGCCTTGGTTGTTATAGCAGAGACTGATTTGGTCAAAACATTTACAGGAAAATGGGGCATTATCAGGAACAAATTACAACTGCTGACCGTACAATTTATAGATCTTGCAGATTTTCCAGGATTCTTGCAAAATGCTCTGTGTAGAGAGCTTCTCCAGTCAATCTTTAATACCTTGAGTGAGGCGCAGGATCTTGTCAAGAAGTGCGGTAATTTAGGCCTCGGCATGGGTAAGCTGCAAATGCAAAGCAGTTTGGATGGTTTATCCATGAAATTAGACAAGCATCTTCAAGACTTTGAGCTGCTCTTTAAAAGCGGAGTTCTACAAGAAGCTGTGATTCCTCCAATGCTTTCTCGGTCAAGAACTATTTTGAGCCGAGAAGCAATACGGTGCACTTGCAGAGAACTTCTAACTCGATTGCAAATTGGAAATATGGAATCCAGACAAAAGGCCCTGGATTCATTACTGGCCTTGATGTTAGAAGATGACAAGAATGTAATTATTGTTGCAGGTCAGGGCAGCGTACCAGTTTTAGTTCATTTGCTGGACTCGAGTTTCTTTGAAATCAAAGAAAAAGCTGCAGCTGCTATCTGCAGGCTTGCCCAAGTTGATAGCTGTGAACATTTGCTGGTTACAGAAGGGGTTCTGTCTCCTTTGGTTAGACTTCTAGAGTCGGGAAGCTCTCTTGCAAAAGAAAAAGCATCTGCAGCTCTTCAAACACTAAGTTTCACCCCTGAAAATGCACGCTCTGTAGGAACACATTGTGGCGTGTCGGCACTAGTGGAAATTTGTCAATTCGGGACCCCTGCAGCCCAGGCAGCTGCTGCAGGGACTCTTAGGAACCTTGCTAGGATTCCAGAGATAAAGCAAAATTTCATTGATGAGAATGCCCTTCCTGTTTTAATAAGGCTGAGTACTTCGGGCACTCCCCTTGCTCAGGAACATTCAGTTGATTGTCTGCAAAACTTGGCATCTAATGATGATAATCTGAGGGCATTGATTGCTAAAGAAGGGGCAATTCATCCTCTTCTATTCTTCTGGGATAGGGCTTCAACTCCTAGAGAACAAGAAATTGCAATCGGAGCACTGAAAAACCTTTCTGCTTGTAGGACAAATTGGGATGCTCTTATTTCTGCTGGTTTTATTCCTCGACTGGACAATGCTTTAAAAAGTGGAATTCCGACTGTTCAACAAATGGCAGCGGTTGCTACGTATGAACTTGGTACTACAATGGAGAATGCGAAGATGCTTGGAGAAGCTGGTTGTATTCCTGCTTTAATTACGATGCTTGAAGCTAAAACTACTACTGAACAGGAAGCGGCAGCACGGGCCTTATCGGTTCTTCTTCACTTTGATGGTAACAGGTCATTATTCAGGAAGGAACCAAAGGGTATTCTCAGAACAGTGCAACTCCTAGATCCATCAAATATCAATATAGACAAGAAATACCCGATTTCCATTCTGCTCAGTCTTTCCAACAATTTTAAATCCAAAAAGCAGATGATAGCAGCTGGAGTCTGCATTCACTTGGAAAAACTTGCAGAATTGGATTGTGCTGCCAAGAAACTTCTTGATTGTCTGCAAAGAGGCCATCTTTGGAATATATTTGGCAGAAGATAGAAGTGTAGAGTTTGTAACCGAAGAGATTTGTTTATTTTCAGTTTTCCTCCCTTTGTCTGTGCATTTTGAAGGGTCATATCGAGAGAGAAAGAATGGTAGTTCTCATTAAAAAATAAGAGCTGAATCTTGTGCTATACGGGCACATCAAAGTTCAAGGCATGCCTCCTCAGCACTGCAGCTAAGCACCTACTGATTTGGTTTGTCCATTCAGTCCAACTTACCAACATGCTCTATACTTATTTTCTTTGTCAGTCTGAACAAATTGACCGATCTCATTTCAGTTGTCAATTGTTCTGGACTAAATACCATATATTTTTTAAATGCTTGAAGAAATTTGTGAGAAGCAAACTATAAATCTTTCATTGCTGTAAGGATTGTATATTATATCGGAATAAGACAAATTCGGCAGTGGATACTGAGAAGCCTTGAATGCATTTCAAGGGTCAAAGTTAATTCAGTTTTTTTCGCCAATTCCTTCTGCAAACGATGTGTTCAGCAGATATATGAAACTAATTTGTCCTTTCCTAAGTAATCTCTGCA

Ace file of the UniGene sp_v1.1_unigene12318

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	armadillo/beta-catenin repeat family protein	-	-	40%
FL-Next	tr=Predicted protein; subsp. trichocarpa).	-	-	47%
Blast2go	protein	-	-	63%

Source	InterPros	Term	Type	Identity
Blast2go	Armadillo	IPR000225	-	63%
Blast2go	Armadillo-like helical	IPR011989	-	63%
Blast2go	Armadillo-type fold	IPR016024	-	63%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: B9IFI6

Fln msg:

Fln protein: MRLMAECSNGDRSPTERVSESDHLQQSQHLALVVIAETDLVKTFTGKWGIIRNKLQLLTVQFIDLADFPGFLQNALCRELLQSIFNTLSEAQDLVKKCGNLGLGMGKLQMQSSLDGLSMKLDKHLQDFELLFKSGVLQEAVIPPMLSRSRTILSREAIRCTCRELLTRLQIGNMESRQKALDSLLALMLEDDKNVIIVAGQGSVPVLVHLLDSSFFEIKEKAAAAICRLAQVDSCEHLLVTEGVLSPLVRLLESGSSLAKEKASAALQTLSFTPENARSVGTHCGVSALVEICQFGTPAAQAAAAGTLRNLARIPEIKQNFIDENALPVLIRLSTSGTPLAQEHSVDCLQNLASNDDNLRALIAKEGAIHPLLFFWDRASTPREQEIAIGALKNLSACRTNWDALISAGFIPRLDNALKSGIPTVQQMAAVATYELGTTMENAKMLGEAGCIPALITMLEAKTTTEQEAAARALSVLLHFDGNRSLFRKEPKGILRTVQLLDPSNINIDKKYPISILLSLSNNFKSKKQMIAAGVCIHLEKLAELDCAAKKLLDCLQRGHLWNIFGRR*

Protein Length: 570

Fln nts: GTCTATTTAATTGCAGCAATCAGTTCTACTTTTGCAGAAATA_-_ATGAGACTAATGGCAGAATGCAGCAATGGAGATCGATCTCCCACCGAGAGAGTTTCTGAAAGCGATCATCTGCAGCAATCGCAACATCTTGCCTTGGTTGTTATAGCAGAGACTGATTTGGTCAAAACATTTACAGGAAAATGGGGCATTATCAGGAACAAATTACAACTGCTGACCGTACAATTTATAGATCTTGCAGATTTTCCAGGATTCTTGCAAAATGCTCTGTGTAGAGAGCTTCTCCAGTCAATCTTTAATACCTTGAGTGAGGCGCAGGATCTTGTCAAGAAGTGCGGTAATTTAGGCCTCGGCATGGGTAAGCTGCAAATGCAAAGCAGTTTGGATGGTTTATCCATGAAATTAGACAAGCATCTTCAAGACTTTGAGCTGCTCTTTAAAAGCGGAGTTCTACAAGAAGCTGTGATTCCTCCAATGCTTTCTCGGTCAAGAACTATTTTGAGCCGAGAAGCAATACGGTGCACTTGCAGAGAACTTCTAACTCGATTGCAAATTGGAAATATGGAATCCAGACAAAAGGCCCTGGATTCATTACTGGCCTTGATGTTAGAAGATGACAAGAATGTAATTATTGTTGCAGGTCAGGGCAGCGTACCAGTTTTAGTTCATTTGCTGGACTCGAGTTTCTTTGAAATCAAAGAAAAAGCTGCAGCTGCTATCTGCAGGCTTGCCCAAGTTGATAGCTGTGAACATTTGCTGGTTACAGAAGGGGTTCTGTCTCCTTTGGTTAGACTTCTAGAGTCGGGAAGCTCTCTTGCAAAAGAAAAAGCATCTGCAGCTCTTCAAACACTAAGTTTCACCCCTGAAAATGCACGCTCTGTAGGAACACATTGTGGCGTGTCGGCACTAGTGGAAATTTGTCAATTCGGGACCCCTGCAGCCCAGGCAGCTGCTGCAGGGACTCTTAGGAACCTTGCTAGGATTCCAGAGATAAAGCAAAATTTCATTGATGAGAATGCCCTTCCTGTTTTAATAAGGCTGAGTACTTCGGGCACTCCCCTTGCTCAGGAACATTCAGTTGATTGTCTGCAAAACTTGGCATCTAATGATGATAATCTGAGGGCATTGATTGCTAAAGAAGGGGCAATTCATCCTCTTCTATTCTTCTGGGATAGGGCTTCAACTCCTAGAGAACAAGAAATTGCAATCGGAGCACTGAAAAACCTTTCTGCTTGTAGGACAAATTGGGATGCTCTTATTTCTGCTGGTTTTATTCCTCGACTGGACAATGCTTTAAAAAGTGGAATTCCGACTGTTCAACAAATGGCAGCGGTTGCTACGTATGAACTTGGTACTACAATGGAGAATGCGAAGATGCTTGGAGAAGCTGGTTGTATTCCTGCTTTAATTACGATGCTTGAAGCTAAAACTACTACTGAACAGGAAGCGGCAGCACGGGCCTTATCGGTTCTTCTTCACTTTGATGGTAACAGGTCATTATTCAGGAAGGAACCAAAGGGTATTCTCAGAACAGTGCAACTCCTAGATCCATCAAATATCAATATAGACAAGAAATACCCGATTTCCATTCTGCTCAGTCTTTCCAACAATTTTAAATCCAAAAAGCAGATGATAGCAGCTGGAGTCTGCATTCACTTGGAAAAACTTGCAGAATTGGATTGTGCTGCCAAGAAACTTCTTGATTGTCTGCAAAGAGGCCATCTTTGGAATATATTTGGCAGAAGATAG___AAGTGTAGAGTTTGTAACCGAAGAGATTTGTTTATTTTCAGTTTTCCTCCCTTTGTCTGTGCATTTTGAAGGGTCATATCGAGAGAGAAAGAATGGTAGTTCTCATTAAAAAATAAGAGCTGAATCTTGTGCTATACGGGCACATCAAAGTTCAAGGCATGCCTCCTCAGCACTGCAGCTAAGCACCTACTGATTTGGTTTGTCCATTCAGTCCAACTTACCAACATGCTCTATACTTATTTTCTTTGTCAGTCTGAACAAATTGACCGATCTCATTTCAGTTGTCAATTGTTCTGGACTAAATACCATATATTTTTTAAATGCTTGAAGAAATTTGTGAGAAGCAAACTATAAATCTTTCATTGCTGTAAGGATTGTATATTATATCGGAATAAGACAAATTCGGCAGTGGATACTGAGAAGCCTTGAATGCATTTCAAGGGTCAAAGTTAATTCAGTTTTTTTCGCCAATTCCTTCTGCAAACGATGTGTTCAGCAGATATATGAAACTAATTTGTCCTTTCCTAAGTAATCTCTGCA

Fln Alignment:

sp_v1.1_unigene12318___RVSESDHLQQSQHLALVVI-AETDLVKTFTGKWGIIRNKLQLLTVQFIDLADFPGFLQNALCRELLQSIFNTLSEAQDLVKKCGNLGLGMGKLQMQSSLDGLSMKLDKHLQDFELLFKSGVLQEAVIPPMLSRSRTILSREAIRCTCRELLTRLQIGNMESRQKALDSLLALMLEDDKNVIIVAGQGSVPVLVHLLD-SSFFEIKEKAAAAICRLAQVDSCEHLLVTEGVL--SPLVRLLXXXXXXXXXXXXXXXQTLSFTPENARSVGTHCGVSALVEICQFGTPXXXXXXXGTLRNLARIPEIKQNFIDENALPVLIRLSTSGTPLAQEHSVDCLQNLASNDDNLRALIAKEGAIHPLLFFWDRASTPREQEIAIGALKNLSACRTNWDALISAGFIPRLDNALKSGIPTVQQMAAVATYELGTTMENAKMLGEAGCIPALITMLXXXXXXXXXXXXXXLSVLLHFDGNRSLFRKEPKGILRTVQLLDPSNINIDKKYPISILLSLSNNFKSKKQMIAAGVCIHLEKLAELDC-AAKKLLDCLQRGHLWNIFGR
B9IFI6_______________KIPENDPITLSNNLLHSLLDQQIPLIQSFKGKWSFIKSKLADLQAQLTDFSEFQTSITNPLSLDLLHSVSQTLNDAHLLAEKCLDTNLTEGKLKTQSDIDSILAKLNQNVRDCEILIKSGVLQDGIL------SGSGPKRELVRAEFRNLITRLQIGSTESKNAAMDTVLSLIQGDDKNVMIAVAQGIVPVLARLLDCNSCFDIKEKSVAAISRISMVDSSKHVLIAEGLLLLNQLIRILESGSWFAKEKACIALQALSFSRDNARAIGSRGGICSLLEICQAGTPSSQGLASGVLRNLAVFEEIRENFIEENAVFVLIGLAASGTALAQENAIGCLCNLVKEDENLKLLIVKEGVVECLRNFWDSCPPARSLEVAVELLRELASNQAIAEGLVSDGFVVRLVAVLNCGVLGVRVAAARAVFELGFIMKTRKLIGELGCISPLIKMLDGKAVEEKEAAAKALSLLVLHAGNRRIFRKTEGGIVSTVQLLDPLIQNLDKKYPVSILASLSNSKKCKKQMIAAGASVHLKKLMEMDVEGSKKLLDGLGRGKIWGVFAR

SNPs (tot: 44)

Position	A %	C %	G %	T %	Probability
328	66		33		0.997452
351		66	33		0.997452
470		75	25		0.996473
1659		12	87		0.992554
1700		14		85	0.993533
1736			10	90	0.90298
1737	90	10			0.90298
1739			10	90	0.90298
1741		10	90		0.90298
1742	10		90		0.90298
1744	90			10	0.90298
1745		10	90		0.90298
1751	90		10		0.90298
1757	10		90		0.90298
1788		11		88	0.923564
1821	87		12		0.992554
1825	12		87		0.992554
1828	87			12	0.992554
1830	87	12			0.992554
1831			12	87	0.992554
1834	87			12	0.992554
1838	87			12	0.992554
1841	87	12			0.992554
1844	87		12		0.992554
1845	87	12			0.992554
1846		12		87	0.992554
1938	20	80			0.999996
1980			87	12	0.992554
1982	25		12	62	1.0
1984	14			85	0.993533
1985	85		14		0.993533
1988		85	14		0.993533
1990			14	85	0.993533
1992		14		85	0.993533
1993	14			85	0.993533
1994			14	85	0.993533
1995		14		71	0.984337
1997	14			85	0.993533
1998	14			85	0.993533
1999			14	85	0.993533
2001		14		85	0.993533
2005	14			85	0.993533
2007			14	85	0.993533
2057	80	20			0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain