SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene12313

Length: 880 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene12313 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein	-	-	67%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	90%
Blast2go	protein	-	-	79%

Source	GOs	Term	Type	Identity
Blast2go	protein transport	GO:0015031	Biological Process	79%
Blast2go	P-P-bond-hydrolysis-driven protein transmembrane transporter activity	GO:0015450	Molecular Function	79%
Blast2go	chloroplast envelope	GO:0009941	Cellular Component	79%
Blast2go	mitochondrial inner membrane presequence translocase complex	GO:0005744	Cellular Component	79%
Blast2go	integral to membrane	GO:0016021	Cellular Component	79%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Mitochondrial inner membrane translocase subunit Tim17/Tim22/Tim23/peroxisomal protein PMP24	IPR003397	-	0.0	79%

Full-Lengther Next Prediction

SNPs (tot: 45)

Position	A %	C %	G %	T %	Probability
167		75		25	0.996473
179	75		25		0.996473
435		93	6		0.999364
437		6		93	0.999364
438	6		93		0.999364
439	10	90			1.0
440	93		6		0.999364
441			6	93	0.999364
443	90	6	3		0.997952
445	3	6		90	0.997952
449	90		10		1.0
476	14		85		1.0
600	11		88		0.999937
605	11	88			0.999937
607			11	88	0.999937
609	87			12	0.999964
612		12	87		0.999964
613		87	12		0.999964
616		86	13		0.999973
620		84	15		0.999986
698	72		27		1.0
709		81		18	0.999994
719	28		57		1.0
756		22		77	1.0
793			65	30	1.0
799	14	85			0.999981
805	85		14		0.999981
844	83	16			0.999991
847		30	60		1.0
848		33		66	1.0
849		22	11	55	0.999999
850	11	88			0.991528
851	88		11		0.991528
854	16	83			0.994512
855	16	83			0.994512
856		16	16	66	0.988813
859	16	16	66		0.988813
860	16	16		66	0.988813
861	16		16	66	0.988813
862	83		16		0.994512
865	80		20		0.995493
866		20		80	0.995493
867		20	20	60	0.99255
868	33	33	33		0.997753
870		33	33	33	0.997753

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain