SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene12283

Length: 989 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene12283

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	60S ribosomal protein L27 n=2 Tax=Picea sitchensis RepID=A9NQ84_PICSI	-	-	98%
FL-Next	sp=60S ribosomal protein L27; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	98%
Blast2go	60s ribosomal protein l27	-	-	87%

Source	ECs	Term	Type	e value	Identity
Blast2go	Protein-synthesizing GTPase.	EC:3.6.5.3	-	0.0	87%

Source	GOs	Term	Type	Identity
Blast2go	ribosome biogenesis	GO:0042254	Biological Process	87%
Blast2go	translation	GO:0006412	Biological Process	87%
Blast2go	structural constituent of ribosome	GO:0003735	Molecular Function	87%
Blast2go	cytosolic large ribosomal subunit	GO:0022625	Cellular Component	87%

Source	InterPros	Term	Type	Identity
Blast2go	Ribosomal protein L27e	IPR001141	-	87%
Blast2go	Translation protein SH3-like, subgroup	IPR014722	-	87%
Blast2go	Ribosomal protein L27e, conserved site	IPR018262	-	87%

Full-Lengther Next Prediction

SNPs (tot: 18)

Position	A %	C %	G %	T %	Probability
37	25	75			0.996473
41	75		25		0.996473
42		75	25		0.996473
55	25		75		0.996473
184		11		88	0.923564
611		5		94	0.997984
698	96		3		0.987242
793	50		50		1.0
798		42		57	1.0
813	75		25		1.0
835	10		90		0.90298
856		75		25	0.996473
871		25		75	0.996473
900	75	25			1.0
901	25	75			1.0
920			25	75	1.0
939		75		25	1.0
952	28		71		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain