SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene12274

Length: 969 nt

Origin of reads: Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene12274

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Hcr2-5D n=1 Tax=Solanum lycopersicum RepID=Q9ZTJ6_SOLLC	-	-	41%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	44%
Blast2go	hcr2-	-	-	54%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LQX6

Fln msg: Distance to subject end: 310 aas, your sequence is shorter than subject: 323 - 818

Fln protein: NCTSLQELRLGFNQLNGSIPSASVWGLMRSLSVLDLSGNYLSGNIPPTLGNPNRLSSIDLSINQLSGGIPSLANYTQLFYIDLSSNNLSGRIPALRNCTRLLYMELSRNIISGIIPAELGFLQQLQMLDLSSNKFESIIPPALGNCSSLRYLYLGNNRLSGSLPPELGKLRELIHLSIQGLCDTPQSFDDPNYADPDYNCARGNISGSIPFEIGNCSNLSFLFLHSNMLTGPYLKPLQD*RSLQVLPSVPTRSRVQFLRKYGKLQSLASLYLFSNNLTGHIPDSIGHLEFLELLDLSRNNMSGTIPFHISGLASLQSLILSQN

Protein Length: 324

Fln nts: AACTGCACATCGCTTCAAGAGTTGAGGCTTGGATTCAATCAATTAAATGGTTCAATCCCTTCCGCTTCCGTTTGGGGTTTGATGAGAAGTCTATCTGTTCTTGACTTATCTGGGAATTACTTAAGTGGTAACATCCCTCCGACTCTAGGCAATCCTAATCGGCTGTCGTCCATCGACCTTAGTATTAACCAATTAAGCGGGGGAATTCCATCTCTGGCCAATTACACCCAGCTATTTTACATCGACTTAAGTTCGAACAACTTGAGCGGAAGAATTCCAGCGCTCCGCAATTGTACCCGGCTATTGTACATGGAACTTTCAAGAAACATCATCAGTGGAATAATTCCAGCGGAATTGGGGTTTCTACAGCAGCTACAGATGCTGGATTTAAGTTCTAACAAATTCGAGAGCATTATTCCTCCGGCACTGGGAAACTGCTCGTCTCTCAGGTATTTATATTTGGGGAACAATCGATTGTCCGGCAGCCTACCACCTGAGTTGGGTAAATTGAGGGAGCTCATTCACCTTTCAATCCAGGGCCTATGTGATACTCCTCAGTCCTTTGATGATCCTAATTATGCTGATCCTGATTATAATTGTGCTCGTGGCAATATTTCAGGTTCTATCCCTTTTGAAATTGGAAATTGCAGTAATCTCTCTTTTCTATTTCTTCATTCAAATATGCTCACGGGGCCATACCTGAAACCATTACAAGATTGAAGAAGCTTACAGGTCTTGCCCTCAGTACCAACCAGATCACGGGTACAATTCCTCAGGAAATACGGAAAGCTCCAATCCCTTGCATCCTTGTATTTATTTTCAAACAACTTAACTGGACATATTCCAGATAGCATAGGTCACTTAGAATTTCTTGAACTCTTAGATTTGAGTAGGAATAATATGTCAGGCACTATCCCTTTTCATATTAGTGGATTGGCTTCACTACAATCTTTGATTTTATCGCAAAAC

Fln Alignment:

sp_v1.1_unigene12274___NCTSLQELRLGFNQLNGSIPSASVWGLMRSLSVLDLSGNYLSGNIPPTLGNPNRLSSIDLSINQLSGGIPSLANYTQ-LFYIDLSSNNLSGRIPA-LRNCTRLLYMELSRNIISGIIPAELGFLQQLQMLDLSSNKFESIIPPALGNCSSLRYLYLGNNRLSGSLPPELGKLRELIHLSIQGLCDTPQSFDDPNYADPDYNCARGNISGSIPFEIGNCSNLSFLFLHSNMLTGPYLKPLQD*R-SLQVLPSVPTRSRVQFLRKYGKLQSLASLYLFSNNLTGHIPDSIGHLEFLELLDLSRNNMSGTIPFHISGLASLQSLILSQN
B8LQX6_______________NCTRLQWIRLSYNSLTGSIPTE--FGRLVKLEQLRLRNNNLSGSIPTSLSNCTSLQGLSIGYNSLTGPIPSVLSLIRNLSLLYFEGNSLSGHIPSSLCNCTELRYIAFSHNNLVGRIPAELGLLQNLQKLYLHTNKLESTIPPSLGNCSSLENLFLGDNRLSGNIPSQFGSLRELFQLSIYG---------------PEY--VKGSISGSIPSEIGNCSSLVWLDFGNNRVQGSV--PMSIFRLPLSTLSLGKNYLTGSIPEAIGNLSQLTSLSLHQNNFTGGIPEAIGNLIQLTSLILNQNNFTGGIPEAIGNLSQLTSLTLNQN

SNPs (tot: 3)

Position	C %	G %	T %	Probability
730	33	66		0.997452
733		66	33	0.997452
739	33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain