SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene12273

Length: 1000 nt

Origin of reads: Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene12273

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Indole-3-acetic acid-amido synthetase GH3.6, putative	-	-	73%
FL-Next	tr=Auxin-induced GH3 protein; Pinus pinaster (Maritime pine).	-	-	73%
Blast2go	gh3 family protein	-	-	82%

Source	GOs	Term	Type	Identity
Blast2go	unidimensional cell growth	GO:0009826	Biological Process	82%
Blast2go	auxin mediated signaling pathway	GO:0009734	Biological Process	82%
Blast2go	auxin homeostasis	GO:0010252	Biological Process	82%
Blast2go	indole-3-acetic acid amido synthetase activity	GO:0010279	Molecular Function	82%
Blast2go	cytoplasm	GO:0005737	Cellular Component	82%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: Q4LAM0

Fln msg: your sequence is shorter than subject: 261 - 615

Fln protein: RRDLGCHSTLLPNMAYFEFLPVHRKREAGGDTLDSPKTLDEKEREELVELVDVKLGQEYELVVTTYAGLNRYRVGDVLRVTGFHNAAPQFHFVCRQNVVLSIDSDKTDEVELHSAVQNSVKHLEPFDAQLIEYTSYADTATIPGHYVLYWELRFNNKAVTVPHSVFEDCCLTVEESLNSVYRQGRASDKSIGPLEIRVVKKGTFDELMDYAISRGASINQYKAPRCVKFTPIVELLNSRVMHSYFSTQPPQWTPGRRDWA*

Protein Length: 262

Fln nts: CGTCGTGACCTTGGCTGTCACTCAACTTTACTCCCAAACATGGCCTATTTCGAGTTCCTTCCCGTTCACCGGAAACGAGAAGCAGGTGGTGACACGCTCGATTCGCCAAAGACCCTCGACGAGAAAGAGCGAGAGGAGCTGGTTGAACTTGTAGACGTGAAGCTTGGGCAAGAATACGAGCTTGTGGTCACCACATATGCTGGTTTGAATCGTTACAGAGTGGGGGATGTGCTACGTGTGACTGGCTTCCACAACGCTGCGCCTCAATTCCATTTTGTATGCAGACAGAACGTTGTGCTGAGTATAGACTCAGACAAAACGGATGAAGTAGAGCTTCACAGTGCGGTACAGAACTCTGTTAAGCATCTGGAGCCGTTTGACGCACAGTTGATCGAGTATACAAGCTATGCCGACACAGCTACAATACCTGGTCACTATGTGCTCTACTGGGAACTTCGCTTCAACAACAAAGCAGTTACAGTTCCTCATTCGGTTTTTGAAGATTGCTGTCTGACTGTAGAAGAATCCCTGAATTCTGTGTATCGGCAAGGAAGAGCGTCGGATAAGTCAATCGGCCCCTTGGAAATTAGGGTAGTCAAGAAGGGAACGTTCGACGAATTGATGGATTACGCTATCAGTAGAGGGGCATCCATAAATCAATACAAAGCTCCCAGATGCGTTAAATTCACCCCCATTGTTGAGCTTCTCAACTCCAGGGTCATGCATTCTTACTTCAGTACGCAGCCGCCGCAATGGACTCCCGGACGCAGAGATTGGGCGTAA___CTCGGATGGAGAGATTTGCAATATCCGCCGCATTGGACTCCCGGATGCAGAGATTGGGCGTAACTCGGATTGAGAGATTGGCAATATCATGAGTTTATGTGATTAAACTAATATGTAATTACATAGGTGGAATATGGAGTGATGTTGGAATGGAATATGGAGTTTTCTTATTAGTATTATATTGGCTTAAAATAAATGGTTAAAGTGTATATTGTTA

Fln Alignment:

sp_v1.1_unigene12273___TLLPNMAYFEFLPVHR-KREAGGDTLDSPKTLDEKEREELVELVDVKLGQEYELVVTTYAGLNRYRVGDVLRVTGFHNAAPQFHFVCRQNVVLSIDSDKTDEVELHSAVQNSVKHLEPFDAQLIEYTSYADTATIPGHYVLYWELRFNNKAVTVPHSVFEDCCLTVEESLNSVYRQGRASDKSIGPLEIRVVKKGTFDELMDYAISRGASINQYKAPRCVKFTPIVELLNSRVMHSYFSTQPPQWTPGRRDW
Q4LAM0_______________TLMPNMAFFEFLPVYRNKNEDAG-----PVTTATEQPAELVDLVDVKVGQEYELVITTYSGLYRYRVGDVLRVTGFHNAAPQFQFVCRKNVMLSIDADKTDEAELHNAVMNAVKHLEPLEATLVEYTSYTDTSTIPGHYVLYWELR--TSALPVPPSVFEDCCLTVEESLNSVYRQCRVADKSIGPLEIKVVEMGTFDKLMDYAISRGSSINQYKAARCVKFAPMVDILNSRVSASYFSPRCPKWTAGRTQW

SNPs (tot: 17)

Position	A %	C %	G %	T %	Probability
145			75	25	0.996473
717	33	66			0.997452
732		33		66	0.997452
753	16		83		0.994512
766		16	83		0.994512
769		66		33	1.0
790	33		66		1.0
857			25	75	0.996473
867	25		75		0.996473
872	75		25		0.996473
893	66	33			0.997452
894		66	33		0.997452
897			33	33	0.997753
905	66		33		0.997452
932	33		66		0.997452
938	66			33	0.997452
948			66	33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain