SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene12268

Length: 3323 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene12268
CACATGGAACAGGTTGAAGCGTCAACAAACCAGGGTGCTGATCAGCAAATGCCCTTGTACAATCTAATGCCCAGGATCCTTTGTCGCGTCATCAATCTTCGGTTGAAGGCTGAACAAGAGACGGACGAAGTGTATGCGCAGATTACTCTGCTCCCAGAAGCTGAGCAAAATGAGACGTGCAGTGATGCGGGTCCTCCCTCTCTGCCAAAATCGAAGAAGAATGTGCATTCGTTCTGCAAGACTCTTACTGCTTCAGATACAAGCACTCACGGGGGCTTCTCCGTTCTCAGGAGACATGCTGATGAGTGTCTTCCACCTCTGGACATGTCCCAGCAGCCCCCAACGCAGGAGTTGGTAGCCAAAGATCTTCATGGAACAGAATGGCGCTTCCGACATATCTTTCGAGGTCAGCCTAGAAGGCACTTGTTAACAACAGGCTGGAGTGTCTTTGTTAGTGCAAAAAGACTAGTTGCAGGCGATGCATTTATTTTCTGAGGGGTGAAAATTCAGAATTGGCGGGTGGGGGTGAGGCGAGTTATGAGACAGCAAAGTAATATGCCATCATCAGTCATATCTAGTCACAGCATGCATTTAGGTGTCATTGCTACTGCATCTCATGCAGTTACAACTCGGACCATGTTTACTGTTTATTATAAACCAAGGACAAGCCAATCAGAGTTCATTATTCCTTATGATAAATATATGGAGGCTGTGAATAGCAACCTTTCAGTTGGAATGAGGTTTAAGATGAGGTTCGAGGGTGAGGAGGCCCCAGAAAGGAGGTTTACTGGAACTATAATTGGAATAGGTGACATTGATCCTTCCAGATGGCCATCTTCAAAGTGGAGATCTCTGAAGGTGCAATGGGATGAAACCTGTGCAATTCCACGACCAGATAGAGTTTCTCCTTGGGAAATAGAGCCGTTTGTGGCACCTCCTGCCCTGAACCCTCAGCCAGTACCTAGGAACAAGAGACCTCGAACAAATGTGTTGCCTACATCCACAGACATGCTAGGTTCATGTAGAACCTCAGTTGACTCCACCACAGTGCTCCGGTATCCGCTGACACTGCAAGGTCAAGACATGAAAACGGGCGGAGACAGTGAGGTGGAAAGCATTCAAAAGCCTATCTTGTGGGGAGCAAAACTGAATGATGCTAAACTAGACTGTGGCGGTCTAGCCTCACAAAAGCTACCACCAGGGTCCGAAAATTGGATGGTGATCCATAGGCTTGAACCCGCTTTTTCAGATTCTTTTGGTGGTCTCCAAGGACATGGCGAAGGATCTCTAAGTCAGAATGCTGAAAATACTCGTCATGTTAATCTTCCCAAGAAGATGTTTCAGGATCACGAGACTGGAGCATTGGATGCATCGACAATAAAACTACAGTTATCAAATGCATGGCCAATTCCTTTTTCCAGCAGCATGATGAATGAGTCAGATCTAAAACTTTCTGTTACTAATCCCATGTCAACCCAGAGGCCCTTTGGATCTCTAAGACATATTGGGATGAATGGCTCTCCACGCTGTTCAAACCTTGCAGTGGGAGAATCTCCTGGAAGCTGGTTTATGTCTTATGTACCTCCTGAGATAGAGGGTTCAGAAGAACCAGCCTCAGGGAATGGAATTACGGTTGGAAAAATACAGTCCAGCAATCTGACAGATACATCACAGTCTAGCACCCATACTTGGGAATTACCAAAAGATAAGAGAGTAGATTCTGTCAGTAATTACAAGTTGTTCGGTTTTCATTTAATTGATAATATTACACCAGATGAAGTGACCCCAGCGACAACCATAGCGTCTGTTGCCGTGGAGGATTTGCAGTTGTGTAATGCCCTGAGATCAAAGGAGGTTCATATTGCGGAGCCTGACCAGGTTTCAGATCCACCAAAGGCAATCAAATACGAGCCACCTGCGGTAAGCTGTGATCAGGAGAAACCTTTGCAAAAGTTATCAAAAGAAACTCAAGTCAAACAGCATGGCAACCCCACCAGGAGCTGTACTAAGGTGCATAAGCAGGGAATAGCTCTTGGAAGGGCTGTTGACCTTACTAAGTTTGAAGGTTACGAGGAATTAATTTGTGAGCTTGAACGCATGTTCAACATTGAAGGAGAACTACGGAATCCTAGCAAAGGTTGGCAGGTTGTGTACACGGATAATGAAGGAGATATGATGCTTGTTGGTGATGATCCATGGCAGGAGTTCTGTAGCATTGTGCGCAAGATTTTCATCTATACTCGAGAAGAGGTTGAGAAAATGACTCCTCAAAAGCATGCCAAACTGCAAGGATGTTCAGATGAGCAACCAACAACCAGAGAAACATCGAAGCATTCTCTCTCCGAGCTTCAGGAATCAACTTTACCTGCAGCCAGTGTAGATGCTTGAAACCGTCGGCAGATTATCTTCAAGTTTTGCTATACTTGATTGATGATTTCCATGGAGTATGAAGGGCATGATTTAACTAGCTTTTCGTCAGTGGCACTGACAGGACAATTAAAAGGCGTTTGTAAGAATGTATGTGGTGTGCTTGCCTGATCTTGACACACTTGGCCTAAATGCGATTTTTTTTCTCAAGTGTTTCAGCCTTGTGATCTGGTCTGGTCATCTTCAAGGAATGTTGTAGTACTGGCTAATCTGGTGCAAATAGTTTGTTGTGATAATGGTTATGCATGACTTTAAATAGAGGAATGTGTTCCAATACCAATTTTGGAGCTCACATTAGCAGCAATACCAACACCTATGATACTGATGTAGATGTTAGGAAAGCCTGTAATTTTTGAGAAAAATCCTTGAGCGTAGACAGAAGATAATTGGGAAAGCATTGTACTTCTGTGTCACTCTGAAATATACAGGCTTGGATGCTAAATGCCAGTCATCTTAAAGCAAGCAAGGGAACCTTGAAATGTTTCATCTGTAACAAGTTAAAACAGGCCAGTGTAAAATACCGCCATCTATTTTCTCTATAGTAGTTGCCATTTCTATTTACCTCGAGGTAACATTGTTCCCTTGTGCCAAGTATGTGAGATAGGTGAGCATTTCAGCAAATTTAATGGTCAATGCTAACCGTCTGACACCAGAGGTTCTTGATTACGAGTGGTTGTATTATCCTCTCTATTTGTAAATAATGATGTGTCTAAATGCAATTGTGCTATCCTTTCCTACAAATGTTCGAGAACAGAATGGACTTTAACACCACATATTTCTACTTATACAAGTCTTTTTTGTCAAGAGCCTGTTTGCAAGTATTCGTTGCATGCATGTCTATTTTGCACGGCAAGTCTTATGTTTCAGGAGTGCGTTATCAAGTACTTGGTTGCATG

Ace file of the UniGene sp_v1.1_unigene12268

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	ARF2; ARF2 (AUXIN RESPONSE FACTOR 2); protein binding / transcription factor	-	-	50%
FL-Next	tr=Putative auxin response factor 3/4; Pinus pinaster (Maritime pine).	-	-	44%
Blast2go	arf1-binding protein	-	-	62%

Source	GOs	Term	Type	Identity
Blast2go	fruit dehiscence	GO:0010047	Biological Process	62%
Blast2go	positive regulation of flower development	GO:0009911	Biological Process	62%
Blast2go	negative regulation of cell proliferation	GO:0008285	Biological Process	62%
Blast2go	ovule development	GO:0048481	Biological Process	62%
Blast2go	floral organ abscission	GO:0010227	Biological Process	62%
Blast2go	leaf senescence	GO:0010150	Biological Process	62%
Blast2go	negative regulation of transcription, DNA-dependent	GO:0045892	Biological Process	62%
Blast2go	DNA binding	GO:0003677	Molecular Function	62%
Blast2go	protein binding	GO:0005515	Molecular Function	62%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: E1UHY2

Fln msg: your sequence is shorter than subject: 796 - 919

Fln protein: HMEQVEASTNQGADQQMPLYNLMPRILCRVINLRLKAEQETDEVYAQITLLPEAEQNETCSDAGPPSLPKSKKNVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSQQPPTQELVAKDLHGTEWRFRHIFRGQPRRHLLTTGWSVFVSAKRLVAGDAFIF*GVKIQNWRVGVRRVMRQQSNMPSSVISSHSMHLGVIATASHAVTTRTMFTVYYKPRTSQSEFIIPYDKYMEAVNSNLSVGMRFKMRFEGEEAPERRFTGTIIGIGDIDPSRWPSSKWRSLKVQWDETCAIPRPDRVSPWEIEPFVAPPALNPQPVPRNKRPRTNVLPTSTDMLGSCRTSVDSTTVLRYPLTLQGQDMKTGGDSEVESIQKPILWGAKLNDAKLDCGGLASQKLPPGSENWMVIHRLEPAFSDSFGGLQGHGEGSLSQNAENTRHVNLPKKMFQDHETGALDASTIKLQLSNAWPIPFSSSMMNESDLKLSVTNPMSTQRPFGSLRHIGMNGSPRCSNLAVGESPGSWFMSYVPPEIEGSEEPASGNGITVGKIQSSNLTDTSQSSTHTWELPKDKRVDSVSNYKLFGFHLIDNITPDEVTPATTIASVAVEDLQLCNALRSKEVHIAEPDQVSDPPKAIKYEPPAVSCDQEKPLQKLSKETQVKQHGNPTRSCTKVHKQGIALGRAVDLTKFEGYEELICELERMFNIEGELRNPSKGWQVVYTDNEGDMMLVGDDPWQEFCSIVRKIFIYTREEVEKMTPQKHAKLQGCSDEQPTTRETSKHSLSELQESTLPAASVDA*

Protein Length: 797

Fln nts: CACATGGAACAGGTTGAAGCGTCAACAAACCAGGGTGCTGATCAGCAAATGCCCTTGTACAATCTAATGCCCAGGATCCTTTGTCGCGTCATCAATCTTCGGTTGAAGGCTGAACAAGAGACGGACGAAGTGTATGCGCAGATTACTCTGCTCCCAGAAGCTGAGCAAAATGAGACGTGCAGTGATGCGGGTCCTCCCTCTCTGCCAAAATCGAAGAAGAATGTGCATTCGTTCTGCAAGACTCTTACTGCTTCAGATACAAGCACTCACGGGGGCTTCTCCGTTCTCAGGAGACATGCTGATGAGTGTCTTCCACCTCTGGACATGTCCCAGCAGCCCCCAACGCAGGAGTTGGTAGCCAAAGATCTTCATGGAACAGAATGGCGCTTCCGACATATCTTTCGAGGTCAGCCTAGAAGGCACTTGTTAACAACAGGCTGGAGTGTCTTTGTTAGTGCAAAAAGACTAGTTGCAGGCGATGCATTTATTTTCTGAGGGGTGAAAATTCAGAATTGGCGGGTGGGGGTGAGGCGAGTTATGAGACAGCAAAGTAATATGCCATCATCAGTCATATCTAGTCACAGCATGCATTTAGGTGTCATTGCTACTGCATCTCATGCAGTTACAACTCGGACCATGTTTACTGTTTATTATAAACCAAGGACAAGCCAATCAGAGTTCATTATTCCTTATGATAAATATATGGAGGCTGTGAATAGCAACCTTTCAGTTGGAATGAGGTTTAAGATGAGGTTCGAGGGTGAGGAGGCCCCAGAAAGGAGGTTTACTGGAACTATAATTGGAATAGGTGACATTGATCCTTCCAGATGGCCATCTTCAAAGTGGAGATCTCTGAAGGTGCAATGGGATGAAACCTGTGCAATTCCACGACCAGATAGAGTTTCTCCTTGGGAAATAGAGCCGTTTGTGGCACCTCCTGCCCTGAACCCTCAGCCAGTACCTAGGAACAAGAGACCTCGAACAAATGTGTTGCCTACATCCACAGACATGCTAGGTTCATGTAGAACCTCAGTTGACTCCACCACAGTGCTCCGGTATCCGCTGACACTGCAAGGTCAAGACATGAAAACGGGCGGAGACAGTGAGGTGGAAAGCATTCAAAAGCCTATCTTGTGGGGAGCAAAACTGAATGATGCTAAACTAGACTGTGGCGGTCTAGCCTCACAAAAGCTACCACCAGGGTCCGAAAATTGGATGGTGATCCATAGGCTTGAACCCGCTTTTTCAGATTCTTTTGGTGGTCTCCAAGGACATGGCGAAGGATCTCTAAGTCAGAATGCTGAAAATACTCGTCATGTTAATCTTCCCAAGAAGATGTTTCAGGATCACGAGACTGGAGCATTGGATGCATCGACAATAAAACTACAGTTATCAAATGCATGGCCAATTCCTTTTTCCAGCAGCATGATGAATGAGTCAGATCTAAAACTTTCTGTTACTAATCCCATGTCAACCCAGAGGCCCTTTGGATCTCTAAGACATATTGGGATGAATGGCTCTCCACGCTGTTCAAACCTTGCAGTGGGAGAATCTCCTGGAAGCTGGTTTATGTCTTATGTACCTCCTGAGATAGAGGGTTCAGAAGAACCAGCCTCAGGGAATGGAATTACGGTTGGAAAAATACAGTCCAGCAATCTGACAGATACATCACAGTCTAGCACCCATACTTGGGAATTACCAAAAGATAAGAGAGTAGATTCTGTCAGTAATTACAAGTTGTTCGGTTTTCATTTAATTGATAATATTACACCAGATGAAGTGACCCCAGCGACAACCATAGCGTCTGTTGCCGTGGAGGATTTGCAGTTGTGTAATGCCCTGAGATCAAAGGAGGTTCATATTGCGGAGCCTGACCAGGTTTCAGATCCACCAAAGGCAATCAAATACGAGCCACCTGCGGTAAGCTGTGATCAGGAGAAACCTTTGCAAAAGTTATCAAAAGAAACTCAAGTCAAACAGCATGGCAACCCCACCAGGAGCTGTACTAAGGTGCATAAGCAGGGAATAGCTCTTGGAAGGGCTGTTGACCTTACTAAGTTTGAAGGTTACGAGGAATTAATTTGTGAGCTTGAACGCATGTTCAACATTGAAGGAGAACTACGGAATCCTAGCAAAGGTTGGCAGGTTGTGTACACGGATAATGAAGGAGATATGATGCTTGTTGGTGATGATCCATGGCAGGAGTTCTGTAGCATTGTGCGCAAGATTTTCATCTATACTCGAGAAGAGGTTGAGAAAATGACTCCTCAAAAGCATGCCAAACTGCAAGGATGTTCAGATGAGCAACCAACAACCAGAGAAACATCGAAGCATTCTCTCTCCGAGCTTCAGGAATCAACTTTACCTGCAGCCAGTGTAGATGCTTGA___AACCGTCGGCAGATTATCTTCAAGTTTTGCTATACTTGATTGATGATTTCCATGGAGTATGAAGGGCATGATTTAACTAGCTTTTCGTCAGTGGCACTGACAGGACAATTAAAAGGCGTTTGTAAGAATGTATGTGGTGTGCTTGCCTGATCTTGACACACTTGGCCTAAATGCGATTTTTTTTCTCAAGTGTTTCAGCCTTGTGATCTGGTCTGGTCATCTTCAAGGAATGTTGTAGTACTGGCTAATCTGGTGCAAATAGTTTGTTGTGATAATGGTTATGCATGACTTTAAATAGAGGAATGTGTTCCAATACCAATTTTGGAGCTCACATTAGCAGCAATACCAACACCTATGATACTGATGTAGATGTTAGGAAAGCCTGTAATTTTTGAGAAAAATCCTTGAGCGTAGACAGAAGATAATTGGGAAAGCATTGTACTTCTGTGTCACTCTGAAATATACAGGCTTGGATGCTAAATGCCAGTCATCTTAAAGCAAGCAAGGGAACCTTGAAATGTTTCATCTGTAACAAGTTAAAACAGGCCAGTGTAAAATACCGCCATCTATTTTCTCTATAGTAGTTGCCATTTCTATTTACCTCGAGGTAACATTGTTCCCTTGTGCCAAGTATGTGAGATAGGTGAGCATTTCAGCAAATTTAATGGTCAATGCTAACCGTCTGACACCAGAGGTTCTTGATTACGAGTGGTTGTATTATCCTCTCTATTTGTAAATAATGATGTGTCTAAATGCAATTGTGCTATCCTTTCCTACAAATGTTCGAGAACAGAATGGACTTTAACACCACATATTTCTACTTATACAAGTCTTTTTTGTCAAGAGCCTGTTTGCAAGTATTCGTTGCATGCATGTCTATTTTGCACGGCAAGTCTTATGTTTCAGGAGTGCGTTATCAAGTACTTGGTTGCATG

Fln Alignment:

sp_v1.1_unigene12268___ASTNQGADQQMPLYNLMPRILCRVINLRLKAEQETDEVYAQITLLPEAEQNETCSDAGPPSLPKSKKNVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSQQPPTQELVAKDLHGTEWRFRHIFRGQPRRHLLTTGWSVFVSAKRLVAGDAFIF*GVKIQNWRVGVRRVMRQQSNMPSSVISSHSMHLGVIATASHAVTTRTMFTVYYKPRTSQSEFIIPYDKYMEAVNSNLSVGMRFKMRFEGEEAPERRFXXXXXXXXXXXPSRWPSSKWRSLKVQWDETCAIPRPDRVSPWEIEPFVAPPALNPQPVPRNKRPRTNVLPTSTDM-LGSCRTSVDSTTVLRYPLTLQGQDM---KTGGDSEVESIQKPILWGAKLNDAKLDCGGLASQKLPPGSENWMVIHRLEPAFSD-------SFGGLQG-HGEGSLSQNAENTRHVNLPKKMF---QDHETGALDASTIKLQLSN---AWPIP-----FSSSMMNESDLKLSVTNPMST-------------QRPFGSLRHIGMNGSPRCSNLAVGESPGSWFMSYVPPEIEGSEEPASGNGITVGKIQSSNLTDTSQSSTHTW----ELPKDKRVDSVS---NYKLFGFHLIDN--ITPDEVTPATTIASVAVE-DLQLCNALRSKEVHIAEPDQVSDPPKAIKYEPPAVSCDQEKPLQKLSK-ETQVKQHGNPTRSCTKVHKQGIALGRAVDLTKFEGYEELICELERMFNIEGELRNPSKGWQVVYTDNEGDMMLVGDDPWQEFCSIVRKIFIYTREEVEKMTPQKHAK-LQGCSDEQPTTRETSKHSLSELQESTLPAAS
E1UHY2_______________SSISQAVNQQMLSYKLPPQILCRVLNVNLHADQEMDEVYAQLTLVPDSEKNEKCMEEQLSVPPSSTP--HMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYSQQRPSQELVAKDLHGREWRFRHIFRGQPRRHLLTTGWSVFVSYKRLVAGDAVLFLRDENGELRLGIRRASQQQSSVPSSVLSSHGIHSGVLAAVAHAVATKSMFHIYYNPRTSPTEFVIPYHKYVKSFNHSFSIGMRFKMRFETEDATERRYTGTIVGIGDVDPMRWPNSRWRSFKVGWDEHAAQERQDRVSPWEIEPFTSATGLNALPGPRVKRLRTSFPSAPTDLSIPDGDTLSDFGESSRFQKVLQGQEMSPLKTPFRTDIMDFMKYRVSDSKALDTEHEISGGARR---GGPEIWPPSGRTDISPSSDLSCDKRKYGQLYGLETPSSINCPSAKSPDTNQQLRYFTQLHGRENG------VALPLSNGPSAAPTSLLSPLFKSPPVNNSELHLSTISPTSVVSDSRKSDLYWDFWQPFPSGR------SPSQAASATPKTASRWKTSSTSPCLSEDTEGASGE-VRISSDYSSKKTMCLSFKQHQLASEASCPQAKDISKVKGERNCKLFGFSLLKESVCVDDPINSAMTEDGVSSEGGLHVPSGDGPLQTAHSKDSDQSEKELHNHYGHEITLRSVEQEISSYAKLRNSVQASG---RSCTKVHKQGNAVGRAVDLSKLRGYDELIRELEHLFNMEGLLSTPEKGWHIVYTDNEGDIMLVGDDPWQEFCNIVCKILICTQEEVQKMTPGMFSEDAQTCFEQQPTTVEVSKCSI-DGQDSSSPLGS

SNPs (tot: 22)

Position	A %	C %	G %	T %	Probability
179		33		66	0.997452
310		20		80	0.995493
740	83		16		0.994512
778	85	14			0.993533
779	85			14	0.993533
784			85	14	0.993533
1060		12		87	0.992554
1292	14		85		0.993533
1663	85		14		0.993533
1793	40		60		1.0
1829			75	25	0.996473
2210	14	85			0.993533
2213			14	85	0.993533
2214	85		14		0.993533
2394		85		14	0.999981
2567	50			12	1.0
2568	50			50	1.0
2734	85			14	0.993533
2743	85	14			0.993533
2749	87		12		0.992554
2775		16		83	0.994512
2833		85	14		0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain