SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene12242

Length: 329 nt

Origin of reads: Biogeco_1 Uma

UniGene Fasta

>sp_v1.1_unigene12242
AGCACCCTTCAATTAGCTGCATCTACAGGGAATCTAGATGCCCCAGTTGATGAATCGATTTTTGATCCAGAGAAAGANATTGACAACCTACTTCCTGTTGAGGTCAAAGAACAGCGTCTTAGTAATTTGTTACAAGCTGTAATGGTCGCTGCCTGTGTTGCAGCTATGCCCGTTCTTAAAATGATTCCTACTTCAGTGCTTTGGGGTTATTTTGCATTCATGGCAATAGAAAGCTTGCCTGGCAATCAATTTTGGGAAAGGATACTACTACTCCTTACTGCTCCAAGCCGTAGATACAAAGTTCTTGAGCAGTCTCATGCTTCATTTGT

Ace file of the UniGene sp_v1.1_unigene12242

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	boron transporter [Oryza sativa Japonica Group]	-	-	3.0e-38	72%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	72%
Blast2go	anion exchanger family protein	-	-	1.17787e-38	90%

Source	GOs	Term	Type	e value	Identity
Blast2go	response to boron-containing substance	GO:0010036	Biological Process	1.17787e-38	90%
Blast2go	anion transport	GO:0006820	Biological Process	1.17787e-38	90%
Blast2go	borate transport	GO:0046713	Biological Process	1.17787e-38	90%
Blast2go	inorganic anion exchanger activity	GO:0005452	Molecular Function	1.17787e-38	90%
Blast2go	borate transmembrane transporter activity	GO:0046715	Molecular Function	1.17787e-38	90%
Blast2go	integral to membrane	GO:0016021	Cellular Component	1.17787e-38	90%
Blast2go	plasma membrane	GO:0005886	Cellular Component	1.17787e-38	90%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Bicarbonate transporter, eukaryotic	IPR003020	-	1.17787e-38	90%
Blast2go	Bicarbonate transporter, C-terminal	IPR011531	-	1.17787e-38	90%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LRN9

Fln msg: Distance to subject end: 138 aas, your sequence is shorter than subject: 109 - 671

Fln protein: STLQLAASTGNLDAPVDESIFDPEKEIDNLLPVEVKEQRLSNLLQAVMVAACVAAMPVLKMIPTSVLWGYFAFMAIESLPGNQFWERILLLLTAPSRRYKVLEQSHASF

Protein Length: 110

Fln nts: AGCACCCTTCAATTAGCTGCATCTACAGGGAATCTAGATGCCCCAGTTGATGAATCGATTTTTGATCCAGAGAAAGAaATTGACAACCTACTTCCTGTTGAGGTCAAAGAACAGCGTCTTAGTAATTTGTTACAAGCTGTAATGGTCGCTGCCTGTGTTGCAGCTATGCCCGTTCTTAAAATGATTCCTACTTCAGTGCTTTGGGGTTATTTTGCATTCATGGCAATAGAAAGCTTGCCTGGCAATCAATTTTGGGAAAGGATACTACTACTCCTTACTGCTCCAAGCCGTAGATACAAAGTTCTTGAGCAGTCTCATGCTTCATTTGT

Fln Alignment:

sp_v1.1_unigene12242___DESIFDPEKEIDNLLPVEVKEQRLSNLLQXXXXXXXXXXXXXLKMIPTSVLWGYFAFMAIESLPGNQFWERILLLLTAPSRRYKVLEQSHASF
B8LRN9_______________DGNAFDPEKHIEACLPVRVKEQRLSNLMQSLLVGGSVGLMPVIKKIPTSVLWGYFAYMAIESLPGNQFWERLLLLFIAPTRRYKVLEDLHASF

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
262	42		57		1.0
264	42		57		1.0
271	42	57			1.0
290	11		88		0.923564
292	88		11		0.923564
294	88		11		0.923564
302		11		88	0.991528
307		44	55		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain