SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene12225

Length: 530 nt

Origin of reads: Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene12225
GTCGCCCATTCGGTTCAGCTCGTCTCGATGCCGAGTTGAAGCTTGCCGGCGAGTACGGTCTACGAAACAAGCGTGAGATCTGGCGTATCGGTCTCATTCTTTCCAAAATCCGACGTGCAGCCCGTGAGCTGCTCAAGCTTGATGACAAGGATCCCAAGCGTCTTTTCGAGGGTAACGCCCTCATTCGTCGGCTCGTGCGGATTGGAGTGTTGGACGAGACCCGTATGCGTCTGGATTACGTGTTGGCATTGAAGGTGGAGGACTTTTTGGAACGTCGCCTCCAAACGCAGGTCTTCAAAACCAACCTCGCAAAGAGCATCCACCACGCCCGTGTTTTGATCAGACAACGTCACATTCGTGTTGGCAAGCAAATCGTCAACATCCCGTCTTTCGTCGTCCGTCTCGACTCCCAGAAGCACATCGACTTCGCTCTTACATCGCCATATGGAGGCGGACGCCCTGGTCGTGTCAAGCGCAAGCGTGCTGCTGCTGCCGCAAAGCGGGAGGAGGGTGGCGACGAGGAGGAAGAA

Ace file of the UniGene sp_v1.1_unigene12225 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	40S ribosomal protein S9 n=2 Tax=Agaricomycetes incertae sedis RepID=B8P5V0_POSPM	-	-	89%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	74%
Blast2go	40s ribosomal protein s9	-	-	95%

Source	ECs	Term	Type	e value	Identity
Blast2go	Protein-synthesizing GTPase.	EC:3.6.5.3	-	0.0	95%

Source	GOs	Term	Type	Identity
Blast2go	ribosome biogenesis	GO:0042254	Biological Process	95%
Blast2go	translation	GO:0006412	Biological Process	95%
Blast2go	structural constituent of ribosome	GO:0003735	Molecular Function	95%
Blast2go	rRNA binding	GO:0019843	Molecular Function	95%
Blast2go	cytosolic small ribosomal subunit	GO:0022627	Cellular Component	95%

Source	InterPros	Term	Type	Identity
Blast2go	Ribosomal protein S4/S9, N-terminal	IPR001912	-	95%
Blast2go	RNA-binding S4 domain	IPR002942	-	95%
Blast2go	Ribosomal protein S4/S9, eukaryotic/archaeal	IPR005710	-	95%
Blast2go	Ribosomal protein S4, conserved site	IPR018079	-	95%
Blast2go	Ribosomal protein S4/S9	IPR022801	-	95%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LND2

Fln msg: STOP codon was not found. Distance to subject end: 3 aas, your sequence is shorter than subject: 176 - 197

Fln protein: RPFGSARLDAELKLAGEYGLRNKREIWRIGLILSKIRRAARELLKLDDKDPKRLFEGNALIRRLVRIGVLDETRMRLDYVLALKVEDFLERRLQTQVFKTNLAKSIHHARVLIRQRHIRVGKQIVNIPSFVVRLDSQKHIDFALTSPYGGGRPGRVKRKRAAAAAKREEGGDEEEE

Protein Length: 177

Fln nts: GTCGCCCATTCGGTTCAGCTCGTCTCGATGCCGAGTTGAAGCTTGCCGGCGAGTACGGTCTACGAAACAAGCGTGAGATCTGGCGTATCGGTCTCATTCTTTCCAAAATCCGACGTGCAGCCCGTGAGCTGCTCAAGCTTGATGACAAGGATCCCAAGCGTCTTTTCGAGGGTAACGCCCTCATTCGTCGGCTCGTGCGGATTGGAGTGTTGGACGAGACCCGTATGCGTCTGGATTACGTGTTGGCATTGAAGGTGGAGGACTTTTTGGAACGTCGCCTCCAAACGCAGGTCTTCAAAACCAACCTCGCAAAGAGCATCCACCACGCCCGTGTTTTGATCAGACAACGTCACATTCGTGTTGGCAAGCAAATCGTCAACATCCCGTCTTTCGTCGTCCGTCTCGACTCCCAGAAGCACATCGACTTCGCTCTTACATCGCCATATGGAGGCGGACGCCCTGGTCGTGTCAAGCGCAAGCGTGCTGCTGCTGCCGCAAAGCGGGAGGAGGGTGGCGACGAGGAGGAAGAA

Fln Alignment:

sp_v1.1_unigene12225___RPFGSARLDAELKLAGEYGLRNKREIWRIGLILSKIRRAAREXXXXXXXXXKRLFEGNALIRRLVRIGVLDETRMRLDYVLALKVEDFLERRLQTQVFKTNLAKSIHHARVLIRQRHIRVGKQIVNIPSFVVRLDSQKHIDFALTSP
B8LND2_______________RPYEKERLDAELKLVGEYGLRNKRELWRVQYTLSRIRNAARMLLTLDEKNPRRIFEGEALLRRMNRYGLLDETQSKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSP

SSRs (tot: 1)

Start position	End position	Sequence	Length
38	49	GCA GCA GCA GCA	12

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain