SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene12215

Length: 1220 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene12215

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Unassigned protein	-	-	-
FL-Next	sp=U-box domain-containing protein 43; Arabidopsis thaliana (Mouse-ear cress).	-	-	37%
Blast2go	protein	-	-	70%

Source	ECs	Term	Type	e value	Identity
Blast2go	Ubiquitin--protein ligase.	EC:6.3.2.19	-	0.0	70%

Source	GOs	Term	Type	Identity
Blast2go	protein ubiquitination	GO:0016567	Biological Process	70%
Blast2go	ubiquitin-protein ligase activity	GO:0004842	Molecular Function	70%
Blast2go	binding	GO:0005488	Molecular Function	70%
Blast2go	ubiquitin ligase complex	GO:0000151	Cellular Component	70%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Armadillo-like helical	IPR011989	-	0.0	70%
Blast2go	Armadillo-type fold	IPR016024	-	0.0	70%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: sp_plants

Fln subject: Q9SFX2

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 320 - 811

Fln protein: LKCELML*NCCLSCLKMEIKEN*QNILEKNI*NV*QNLFQHLQMKKRKLPQLE*LEIFP*IAR*QNGF*KLGRCLRL*ISFLLEAFKPLVIL*KIS*LKILQEYYVGLQYPQIPIYNSKLLELMLFQFL*EFFNLVLL*QSAGQPFHSSNFHRIQEI*AHQSGKSKAFLCFSPSSVRRCRVHRGVCSVRTSFCLVEAEAIIPLVQALEEKEGGASEAALKALSTLVNDEYLENGVREIELADGIKPIVRLLTVGSTGEQEKAVWILERVFRNESYKLKYGNAAQMPLVDITQKGTNASKRLAAKILGHLNLLHEQSSYF*

Protein Length: 321

Fln nts: CTGAAATGCGAGCTTATGTTGTGAAACTGTTGTTTATCTTGTCTCAAGATGGAGATAAAAGAAAATTAGCAGAACATCTTGGAGAAAAATATATGAAATGTTTAGCAAAACTTATTTCAACATCTTCAAATGAAGAAGAGAAAGCTGCCGCAGTTGGAATAATTGGAAATCTTCCCTTAAATAGCGAGATAACAGAATGGCTTCTAGAAGCTGGGACGTTGTCTACGATTGTGAATATCTTTTCTTCTGGAAGCCTTCAAACCACTGGTGATTTTGTGAAAAATCAGTTAGTTGAAAATACTGCAGGAGTATTATGTCGGTTTACAGTACCCACAGATCCCGATTTACAACTCAAAGCTGCTGGAGCTGATGTTATTCCAATTCTTGTAAGAGTTCTTCAATCTGGTACTCCTTTAGCAAAGTGCAGGGCAGCCATTTCACTCGAGCAATTTTCACAGAATTCAGGAAATTTGAGCACACCAGTCAGGAAAAAGCAAGGCTTTTTTATGTTTCTCACCTTCTTCTGTTAGGCGGTGTAGAGTTCACAGAGGTGTCTGTTCAGTTAGAACTTCTTTCTGTCTTGTTGAGGCCGAGGCTATTATCCCTCTAGTTCAAGCTCTTGAAGAGAAAGAAGGAGGTGCATCAGAAGCTGCACTGAAGGCTCTCTCAACTTTGGTAAATGATGAATACTTGGAAAATGGTGTTAGAGAAATTGAACTGGCAGATGGTATTAAGCCAATTGTCAGATTGCTTACTGTTGGATCCACAGGAGAGCAGGAAAAAGCTGTCTGGATTCTGGAAAGGGTGTTTCGGAATGAAAGTTACAAGTTAAAATATGGAAATGCAGCTCAGATGCCTCTTGTAGACATCACACAAAAGGGCACAAATGCATCAAAGCGCTTGGCAGCAAAAATCCTTGGTCACTTGAATCTTCTTCATGAGCAGTCTTCCTACTTCTAA___TTTCATCCATAATGTACGCATTGTAGAACTATAAAATCTTCTCCATGAGCAGTCTTTCTATTTTCTCTAGGATACAGATATCATATTCTGATATTGACTGATATGCCAAATGAATAATTCCCTAGGTATGGGGTTTTCTGGACCAGCTTTTGTCCTGACGAAAAATGATGAAATAATTTCAGGTGTACACTGGAGCATCTATTATTTCCTGTACATTAGAGAAGCACATATTACACTAGTGGAATTGAAGGGAAGTTCAT

Fln Alignment:

sp_v1.1_unigene12215___FLCFS--PSSVRRCRVHRGVCSVRTSFCLVEAEAIIPLVQALEEKEGGASEAALKALSTLVNDEY-LENGVREIELADGIKPIVRLLTVGSTGE-QEKAVWILERVFRNESYKLKYGNAAQM--PLVDITQKGTNASKRLAAKILGHLNLLHEQSSYF
Q9SFX2_______________FSCLSKPPVVLGICKIHQGICSVRESFCLVEGQAVDKLVDLLDHENDKVVGPALAALSTLLEDGLDVVQGVRLIDEADGITPILNVLLENRTENLRIRAVWMVERILRIEEIAREVGEEQNVTAALVDAFQNADFRTRQIAEKALRHIDKIPNFSGIF

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
534	33		66		0.997452
547		71		14	0.984337
548	71		14	14	0.984337
550	71		28		1.0
566	85	14			0.993533
794	88			11	0.923564
849	11	88			0.923564
851		88	11		0.923564
852	88		11		0.923564

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain