SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene12210

Length: 351 nt

Origin of reads: Uma

UniGene Fasta

>sp_v1.1_unigene12210
ATCCGAGGCTGGGCACCACTTATCCCTTCACAATGCCCCATCGCGAGACTCCCATTATCCTCGGGGAATGGTGGAACAGAAATCCCATAGATGTGGTGAATCAGGCCACACGCACAGGAGCTGCACCTAATGTGTCTGATGCTTTTACTATTAACAGTCAGCCGGGAGATTTATATCCATGTTCAACCAGAGACACATTTCGGCTACCAATATACGACGGCGAGATTCATCTTCTGCGCATTGTGAACGCTGCAAAACTCAATCAAGAATTATTTTTCAGCGTCGCCAATCACAAGCTAACCGTTGTGGCCGTAGATGCTTCTTATACTAAACCCTTCAGAACCAAGTATG

Ace file of the UniGene sp_v1.1_unigene12210

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Laccase-like multicopper oxidase 130 (Fragment) n=1 Tax=Ginkgo biloba RepID=Q693D1_GINBI	-	-	79%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	90%
Blast2go	diphenol oxidase laccase	-	-	83%

Source	ECs	Term	Type	e value	Identity
Blast2go	L-ascorbate oxidase.	EC:1.10.3.3	-	0.0	83%

Source	KEGGs	Term	Type	Identity
Blast2go	Ascorbate and aldarate metabolism	00053		83%
Blast2go	Metabolic pathways	01100		83%
Blast2go	Laccase.	EC:1.10.3.2	-	83%

Source	GOs	Term	Type	Identity
Blast2go	oxidation-reduction process	GO:0055114	Biological Process	83%
Blast2go	lignin catabolic process	GO:0046274	Biological Process	83%
Blast2go	copper ion binding	GO:0005507	Molecular Function	83%
Blast2go	L-ascorbate oxidase activity	GO:0008447	Molecular Function	83%
Blast2go	laccase activity	GO:0008471	Molecular Function	83%
Blast2go	apoplast	GO:0048046	Cellular Component	83%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Multicopper oxidase, type 1	IPR001117	-	0.0	83%
Blast2go	Cupredoxin	IPR008972	-	0.0	83%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LPF9

Fln msg: Distance to subject end: 311 aas, your sequence is shorter than subject: 116 - 573

Fln protein: PRLGTTYPFTMPHRETPIILGEWWNRNPIDVVNQATRTGAAPNVSDAFTINSQPGDLYPCSTRDTFRLPIYDGEIHLLRIVNAAKLNQELFFSVANHKLTVVAVDASYTKPFRTKY

Protein Length: 117

Fln nts: ATCCGAGGCTGGGCACCACTTATCCCTTCACAATGCCCCATCGCGAGACTCCCATTATCCTCGGGGAATGGTGGAACAGAAATCCCATAGATGTGGTGAATCAGGCCACACGCACAGGAGCTGCACCTAATGTGTCTGATGCTTTTACTATTAACAGTCAGCCGGGAGATTTATATCCATGTTCAACCAGAGACACATTTCGGCTACCAATATACGACGGCGAGATTCATCTTCTGCGCATTGTGAACGCTGCAAAACTCAATCAAGAATTATTTTTCAGCGTCGCCAATCACAAGCTAACCGTTGTGGCCGTAGATGCTTCTTATACTAAACCCTTCAGAACCAAGTATG

Fln Alignment:

sp_v1.1_unigene12210___PRLGTTYPFTMPHRETPIILGEWWNRNPIDVVNQATRTGAAPNVSDAFTINSQPGDLYPCSTRDTFRLPIYDGEIHLLRIVNAAKLNQELFFSVANHKLTVVAVDASYTKPFRTK
B8LPF9_______________PRLGTTYPFTAPHRETPIMLGEWWNRNPIDVVNQATRTGAAPNVSDAYTINGQPGDLYPCSRRETFRVPIYNEEIHLLRIVNAA-LNQELFFTVANHKLTVVAVDASYTKPFRTK

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
273		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain