SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene12185

Length: 988 nt

Origin of reads: Biogeco_1

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene12185

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Plasma membrane ATPase n=10 Tax=Poaceae RepID=PMA1_ORYSJ	-	-	77%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	85%
Blast2go	plasma membrane h+-atpase	-	-	86%

Source	ECs	Term	Type	e value	Identity
Blast2go	Proton-exporting ATPase.	EC:3.6.3.6	-	0.0	86%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Oxidative phosphorylation	00190		0.0	86%

Source	GOs	Term	Type	Identity
Blast2go	auxin biosynthetic process	GO:0009851	Biological Process	86%
Blast2go	ATP biosynthetic process	GO:0006754	Biological Process	86%
Blast2go	proton transport	GO:0015992	Biological Process	86%
Blast2go	hydrogen-exporting ATPase activity, phosphorylative mechanism	GO:0008553	Molecular Function	86%
Blast2go	metal ion binding	GO:0046872	Molecular Function	86%
Blast2go	ATP binding	GO:0005524	Molecular Function	86%
Blast2go	integral to membrane	GO:0016021	Cellular Component	86%
Blast2go	plasma membrane	GO:0005886	Cellular Component	86%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LQS1

Fln msg: Overlapping hits, possible frame ERROR between 202 and 166, Unexpected STOP codon at 3' end. Distance to subject end: 35 aas, your sequence is shorter than subject: 236 - 955

Fln protein: WNDWDGVNDAPALKKADIGIAVADATDAARSASDIVLTEPGLSVIIHAVITSRCxxxxxxxxxxxxxxITIRIVLGFLLITLIWKFDCSAFMALIMAILNDGTIRTISKDRVKPSPLPDSWKLKEIFATGVVLGTYLATMTVIFFWAMYDHQFFTEKFGVRPLRTNNECMAALYLQVSIVSQALIFVTRFRS*SFLKRPALLLVIAFIIAQLTATFIAVYATGICRNQWHRMGYG*

Protein Length: 237

Fln nts: GTGGAATGACTGGGATGGAGTTAACGACGCTCCGGCTTTGAAGAAGGCAGATATCGGAATTGCAGTTGCTGATGCCACGGATGCCGCAAGAAGTGCCTCAGACATTGTACTTACGGAACCAGGGCTTAGTGTCATTATCCATGCTGTCATTACCAGTCGTTGCxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxATCACAATCCGTATTGTGCTTGGCTTCTTGCTGATCACCCTGATATGGAAATTTGATTGCTCTGCTTTTATGGCTCTGATCATGGCTATTCTTAATGATGGCACAATCAGGACAATATCCAAGGACCGTGTTAAGCCATCTCCACTGCCTGACAGTTGGAAGTTGAAGGAAATATTTGCAACAGGTGTTGTTTTGGGCACCTACCTCGCTACCATGACAGTCATATTTTTCTGGGCAATGTACGACCATCAATTTTTCACGGAGAAGTTTGGTGTGAGACCCTTAAGAACAAACAATGAATGCATGGCTGCACTGTACTTGCAAGTCAGTATTGTGAGCCAGGCCCTCATCTTTGTGACTCGGTTCCGCAGCTGATCATTTTTAAAGAGGCCTGCCCTTCTACTTGTCATTGCCTTTATAATAGCTCAATTGACTGCTACATTCATTGCAGTGTATGCAACTGGTATTTGCAGGAATCAATGGCATCGGATGGGGTATGGGTAGTATTAGGCTATATCGATTTTGTGTCGCCCCTCATTGCAAAGCAACCACGCAAGCCCGTACTAGTCGCTTTTATGTTGCTGCAGGTCAACAGGCAAGCCTCGGCCCAGGCATTAGAGAAAACCGCCATCGGCTTTTGTGTTGCCGCAGATCAACAGGCAAGCCTCAGCCCACTCTCCTCTTCCTGTCCGAGCCACCAAACAACCCAGTCAGTTTATTTGTTCCCACAGACCGACAGCCATTCCACGTCGAGTAGTTTCGCTATTCCCTATTCCATTCCCAT

Fln Alignment:

sp_v1.1_unigene12185___DGVNDAPALKKXXXXXXXXXXXXXXXXXXXXVLTEPGLSVIIHAVITSRCIFQxxxxxxxxxxAVSITIRIVLGFLLITLIWKFDCSAFMALIMAILNDGTIRTISKDRVKPSPLPDSWKLKEIFATGVVLGTYLATMTVIFFWAMYDHQFFTEKFGVRPLRTN-NECMAALYLQVSIVSQALIFVTRFRS*SFLKRPALLLVIAFIIAQLTATFIAVYA
B8LQS1_______________DGVNDAPALKKADIGIAVADATDAARGASDIVLTEPGLSVIISAVLTSRAIFQxxxxxxxxxxAVSITIRIVLGFMLIALIWRFDFSPFMVLIIAILNDGTIMTISKDRVKPSPQPDSWKLKEIFATGVVLGTYLAVMTVIFFWAMHKTDFFPNKFGVRPIRDSPHELTSALYLQVSIVSQALIFVTRSRSWSFVERPGLLLMTAFIIAQLIATFLAVYA

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
339	50		50		1.0
353		50		50	1.0
405		50		50	1.0
441	50		50		1.0
466	40		60		1.0
507	25		75		0.996473
513		75		25	0.996473
567	33		66		0.997452
568	33		66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain