SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene12171

Length: 1306 nt

Origin of reads: Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene12171

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DUF936 domain containing protein	-	-	8.0e-31	40%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	48%
Blast2go	protein	-	-	1.48912e-31	53%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5ACT5

Fln msg: your sequence is longer than subject: 265 - 127

Fln protein: MAHNKQIDKECASNNKPLIVLETPSPQKSQNSLLPSSSSKKVSSTSTQPLPSKGTGNASHNPNDKRRSAENGDTKSLYSLKSAGVALRRIPNVTAAQNASGRSMSKTGLESSQKEHSVVEWVKGNGLDEAADLARQLQSQSQSWFLKFIEGYLDNGSHVADGTENGADSTGAKTGTQQDNSQIAAMLAQIKKVNDWLDEINPEKGPNSDDEEGSIDPELADTLVRLRRKIYEFLLQHVESAALALGNQSVTAQSMESKVGSRNQ*

Protein Length: 266

Fln nts: GTGAGTGCAACTTCATGGGTTCAAGCAGCTTTAGCTACTGATTTATCTCCCTTTGCTCTTCTTAGTAAGCAGTCTTCTAGCTCAACACCAAAG_-_ATGGCACACAATAAACAGATTGATAAAGAATGTGCAAGTAATAACAAACCATTAATTGTACTTGAAACACCATCTCCACAGAAAAGTCAGAATTCATTATTGCCTTCTTCATCCTCAAAGAAAGTGTCTAGCACATCCACACAGCCTCTCCCTAGCAAAGGAACGGGCAATGCATCTCACAATCCAAATGACAAAAGACGCTCTGCTGAAAATGGGGATACGAAGTCTCTGTATTCCTTGAAGTCAGCAGGGGTTGCATTGCGGCGGATACCAAATGTTACTGCTGCACAGAATGCATCGGGGAGGAGTATGAGCAAAACTGGTTTAGAATCCTCTCAAAAGGAGCATTCGGTTGTTGAGTGGGTAAAAGGAAATGGACTGGATGAAGCTGCAGATCTAGCAAGACAGCTGCAGAGTCAATCACAAAGCTGGTTCTTGAAATTCATCGAAGGATACTTGGATAATGGTTCCCACGTTGCTGATGGTACAGAAAATGGAGCCGACAGTACTGGAGCAAAAACAGGTACACAGCAAGATAATAGCCAAATTGCAGCAATGTTGGCTCAGATTAAAAAAGTTAATGACTGGTTGGATGAAATAAATCCTGAAAAGGGTCCCAATTCTGATGACGAGGAAGGAAGTATAGATCCAGAACTGGCTGATACATTAGTTAGACTTCGAAGGAAAATATACGAGTTTCTTCTTCAGCACGTTGAATCTGCTGCACTGGCACTTGGTAACCAGTCTGTTACAGCTCAAAGTATGGAATCAAAGGTGGGCAGCAGAAACCAGTAG___GCAGGCTGGTAATTTTCATGTCGGCTAGTAAGATACACGGACTCAACTGATAATATTCAGAGTTCAGAGTTCCTGCTGTTCATTTGGTAGAAACCAGTGAACTAGCTGAGAGCCATGAATTTTTATTTTACCCATACCATGATGAATAGAGCTTGATATCAAATCACCATGTATCTGGCATGTACTAGACATTGGTTTGTCCATTAAGTGCTATTCTGGTTTGTATGATAGCCTAAAGATCAAGACCATCAGAAGAAATCAGACAGAAATGCCAAGAGGGGCATTCCTTGATCCTGAAGGCTACATTGTTATCGAAATAAAAATGCTCATGGTGGTAAAGGCAGTGCTGTCGGAGAGGGCATGTGAAAAAACGCATACCTATTGATGATATATCAAATATCAAATATTAGGAATAAGC

Fln Alignment:

sp_v1.1_unigene12171___WVKGNGLDEAADLARQLQSQSQSWFLKFIEGYLDNGSHVADGTENGADSTGAKTGTQQDNSQIAAMLAQIKKVNDWLDEINPEKGPNSDDEEGSIDPELADTLVRLRRKIYEFLLQHVESAALALGNQS
D5ACT5_______________WVKGNGVNDTVELSKLLHKEATEWFLEFIERALDAGFHTSKEKEGDTADSIAKSQSQKDKSQIAAMLSQLKKANDWLDQL----GKNQGDDERSKMVEIVD---RLKQKIYAFLMQHVESAACALDNQA

SNPs (tot: 29)

Position	A %	C %	G %	T %	Probability
812		16	83		0.994512
824			14	85	0.993533
825			85	14	0.993533
829	14	85			0.993533
830	85	14			0.993533
833			85	14	0.993533
835		85	14		0.993533
838			12	87	0.992554
840		12	75		0.975346
843	75	12	12		0.975346
847		87		12	0.992554
848	87			12	0.992554
850			12	87	0.992554
855		12		87	0.992554
858	87			12	0.992554
859		12	87		0.992554
1130	85		14		0.993533
1132		14		85	0.993533
1135	14			85	0.993533
1136	14		85		0.993533
1138			85	14	0.993533
1139	85	14			0.993533
1141		14		85	0.993533
1142	14			85	0.993533
1145	14		85		0.993533
1147		85		14	0.993533
1152			85	14	0.993533
1153	14	85			0.993533
1211	75			25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain