SustainPineDB

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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene12143

Length: 284 nt

Origin of reads: Uma

UniGene Fasta

>sp_v1.1_unigene12143
CCCTTTCTGTATGCAACTTCTCAACGATGCCATTGACGCTTGTAAGGAGCAGTTGGCTGACTGTGAACGAACTTCACCCCATGAGGATGTACAAAATGCTCCTAATACCAATGGCAGACCTGTGCTTGAGGAATTCATTCCTATTAAGAAATCTTCTCAAGCGACTGAAAACAAACCTGAGGGAAATCATGTTTCCAAGAAGGCGAGATTCAACAACGGTGATAAACCTAATTGGATGATCTCGGCTAATTTATGGAACCCAGATCCCGAAACTATTGATAGCA

Ace file of the UniGene sp_v1.1_unigene12143

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	myb family transcription factor	-	-	9.0e-10	35%
FL-Next	tr=Putative uncharacterized protein; Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress).	-	-	0.0	38%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: D7KWE9

Fln msg: Distance to subject end: 224 aas, your sequence is shorter than subject: 94 - 353

Fln protein: PFCMQLLNDAIDACKEQLADCERTSPHEDVQNAPNTNGRPVLEEFIPIKKSSQATENKPEGNHVSKKARFNNGDKPNWMISANLWNPDPETIDS

Protein Length: 95

Fln nts: CCCTTTCTGTATGCAACTTCTCAACGATGCCATTGACGCTTGTAAGGAGCAGTTGGCTGACTGTGAACGAACTTCACCCCATGAGGATGTACAAAATGCTCCTAATACCAATGGCAGACCTGTGCTTGAGGAATTCATTCCTATTAAGAAATCTTCTCAAGCGACTGAAAACAAACCTGAGGGAAATCATGTTTCCAAGAAGGCGAGATTCAACAACGGTGATAAACCTAATTGGATGATCTCGGCTAATTTATGGAACCCAGATCCCGAAACTATTGATAGCA

Fln Alignment:

sp_v1.1_unigene12143___PFCMQLLNDAIDACKEQLADCERTSPHEDVQNAPNTNGRPVLEEFIPIKKSSQATENKPEGNHVS--KKARFNNGDKPNWMISANLWNPDPE
D7KWE9_______________PLCLELVTQAIEACRKELSGTTTTSEQCSEQTT-SVCGGPVFEEFIPIKKRSLCEEQEEDGEHESSPELEQIGNNKKSDWLRSVQLWTPSPD

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain